Difference between revisions of "TSS:Hg 168984.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000269389.7:-28 uc002keo.4:-28 AK290708:-28 NM_003004:-75 ENST00000581691.5:-104 uc060lyw.1:-104 ENST00000582563.5:174 uc060lyx.1:174 AK223104:175...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:10707 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=-28 | |distance=-28 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-190 |
|end=82333970 | |end=82333970 | ||
| + | |end_of_center_position=82333957 | ||
|entrez_id=6398 | |entrez_id=6398 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| − | |gene_alias=K12 | + | |gene_alias=K12{{!}}SECTM |
|gene_description=secreted and transmembrane 1 | |gene_description=secreted and transmembrane 1 | ||
|gene_id=6398 | |gene_id=6398 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_003004 | |nearest_refseq=NM_003004 | ||
|nearest_unigene=Hs.558009 | |nearest_unigene=Hs.558009 | ||
| − | |num_trans= | + | |num_trans=6398 |
|species=human | |species=human | ||
|start=82333942 | |start=82333942 | ||
| + | |start_of_center_position=82333956 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AK290708 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_168984.1 | |tss_id=hg_168984.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A8K3U3 | + | |uniprot_id=A8K3U3 |
}} | }} | ||
Latest revision as of 18:36, 20 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 82333956 |
|---|---|
| End of the center position in the TSS region: | 82333957 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK290708 |
|---|---|
| Distance: | -28 |
| Num_trans: | 6398 |
| All_trans: | HGNC:10707 |
TATA-Box annotation
| Distance to TSS: | -190 |
|---|---|
| Nearest PromoterID: | NM_003004 |
| Entrez ID: | 6398 |
| Nearest Unigene: | Hs.558009 |
| Nearest Refseq: | NM_003004 |
| Nearest Ensembl: | ENSG00000141574 |
| Gene Name: | secreted and transmembrane 1 |
| Gene Alias: | K12|SECTM |
| Gene Description: | secreted and transmembrane 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
