Difference between revisions of "TSS:Hg 168983.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000582563.5:107 uc060lyx.1:107 AK223104:108 ENST00000582290.5:110 uc060lyz.1:110 U77643:111 ENST00000269389.7:-112 uc002keo.4:-112 AK290708:-112 A...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:10707 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|distance=107 | |distance=107 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-115 |
|end=82333886 | |end=82333886 | ||
| + | |end_of_center_position=82333881 | ||
|entrez_id=6398 | |entrez_id=6398 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias=K12 | + | |gene_alias=K12{{!}}SECTM |
|gene_description=secreted and transmembrane 1 | |gene_description=secreted and transmembrane 1 | ||
|gene_id=6398 | |gene_id=6398 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_003004 | |nearest_refseq=NM_003004 | ||
|nearest_unigene=Hs.558009 | |nearest_unigene=Hs.558009 | ||
| − | |num_trans= | + | |num_trans=6398 |
|species=human | |species=human | ||
|start=82333875 | |start=82333875 | ||
| + | |start_of_center_position=82333880 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000582563.5 | + | |transcript_name=ENST00000582563.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_168983.1 | |tss_id=hg_168983.1 | ||
Latest revision as of 18:36, 20 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 82333880 |
|---|---|
| End of the center position in the TSS region: | 82333881 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000582563.5 |
|---|---|
| Distance: | 107 |
| Num_trans: | 6398 |
| All_trans: | HGNC:10707 |
TATA-Box annotation
| Distance to TSS: | -115 |
|---|---|
| Nearest PromoterID: | NM_003004 |
| Entrez ID: | 6398 |
| Nearest Unigene: | Hs.558009 |
| Nearest Refseq: | NM_003004 |
| Nearest Ensembl: | ENSG00000141574 |
| Gene Name: | secreted and transmembrane 1 |
| Gene Alias: | K12|SECTM |
| Gene Description: | secreted and transmembrane 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
