Difference between revisions of "TSS:Hg 159721.1"
From referenceTSS
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| Line 3: | Line 3: | ||
|RHOIP3= | |RHOIP3= | ||
|RIP3= | |RIP3= | ||
| − | |all_trans= | + | |all_trans=HGNC:30321 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| − | |distance= | + | |distance=56 |
| − | |distance_to_tss=- | + | |distance_to_tss=-60 |
|end=17042401 | |end=17042401 | ||
|end_of_center_position=17042397 | |end_of_center_position=17042397 | ||
|entrez_id=23164 | |entrez_id=23164 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=M-RIP | + | |gene_alias=M-RIP{{!}}MRIP{{!}}RHOIP3{{!}}RIP3{{!}}p116Rip |
|gene_description=myosin phosphatase Rho interacting protein | |gene_description=myosin phosphatase Rho interacting protein | ||
|gene_id=23164 | |gene_id=23164 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:30321 | |hgnc_mgi_id=HGNC:30321 | ||
|nearest_ensembl=ENSG00000133030 | |nearest_ensembl=ENSG00000133030 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001364716 |
|nearest_refseq=NM_015134 | |nearest_refseq=NM_015134 | ||
|nearest_unigene=Hs.462341 | |nearest_unigene=Hs.462341 | ||
| − | |num_trans= | + | |num_trans=23164 |
|p116Rip= | |p116Rip= | ||
|species=human | |species=human | ||
| Line 31: | Line 31: | ||
|start_of_center_position=17042396 | |start_of_center_position=17042396 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000651222.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_159721.1 | |tss_id=hg_159721.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A494BZV2 Q6WCQ1 Q8N236 |
}} | }} | ||
Latest revision as of 15:14, 20 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 17042396 |
|---|---|
| End of the center position in the TSS region: | 17042397 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000651222.2 |
|---|---|
| Distance: | 56 |
| Num_trans: | 23164 |
| All_trans: | HGNC:30321 |
TATA-Box annotation
| Distance to TSS: | -60 |
|---|---|
| Nearest PromoterID: | NM_001364716 |
| Entrez ID: | 23164 |
| Nearest Unigene: | Hs.462341 |
| Nearest Refseq: | NM_015134 |
| Nearest Ensembl: | ENSG00000133030 |
| Gene Name: | myosin phosphatase Rho interacting protein |
| Gene Alias: | M-RIP|MRIP|RHOIP3|RIP3|p116Rip |
| Gene Description: | myosin phosphatase Rho interacting protein |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
