Difference between revisions of "TSS:Mm 10561.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK011601:-250 AK171729:-391 | + | |all_trans=LF258967:-240 MA494544:-240 AK011601:-250 AK171729:-391 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance=- | + | |distance=-240 |
|distance_to_tss=717 | |distance_to_tss=717 | ||
|end=18027983 | |end=18027983 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=predicted gene, 17762 |
|gene_id=100034739 | |gene_id=100034739 | ||
| − | |gene_name= | + | |gene_name=Gm17762 |
|gene_source=MGI:5009925 | |gene_source=MGI:5009925 | ||
|gene_symbol=Gm17762 | |gene_symbol=Gm17762 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_028378 | |nearest_refseq=NR_028378 | ||
|nearest_unigene=Mm.401643 | |nearest_unigene=Mm.401643 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=mouse | |species=mouse | ||
|start=18027948 | |start=18027948 | ||
|start_of_center_position=18027965 | |start_of_center_position=18027965 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-7(GCCTTTAGAGTC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=LF258967 MA494544 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_10561.1 | |tss_id=mm_10561.1 | ||
Latest revision as of 18:18, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 18027965 |
|---|---|
| End of the center position in the TSS region: | 18027966 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF258967 MA494544 |
|---|---|
| Distance: | -240 |
| Num_trans: | 4 |
| All_trans: | LF258967:-240 MA494544:-240 AK011601:-250 AK171729:-391 |
TATA-Box annotation
| Distance to TSS: | 717 |
|---|---|
| Nearest PromoterID: | NR_028378 |
| Entrez ID: | 100034739 |
| Nearest Unigene: | Mm.401643 |
| Nearest Refseq: | NR_028378 |
| Nearest Ensembl: | |
| Gene Name: | Gm17762 |
| Gene Alias: | - |
| Gene Description: | predicted gene, 17762 |
| Gene Type: | ncRNA |
| CpG%: | 0.065 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -7(GCCTTTAGAGTC,+,0.00) |
