Personal tools

Difference between revisions of "TSS:Hg 168280.1"

From referenceTSS

Jump to: navigation, search
 
(One intermediate revision by the same user not shown)
Line 2: Line 2:
 
|PTDSR=
 
|PTDSR=
 
|PTDSR1=
 
|PTDSR1=
|all_trans=AK021780:0 ENST00000397625.8:-3 uc002jso.4:-3 BC047003:-3 AK314541:26 ENST00000585429.1:61 uc060kmf.1:61 AB011157:83 BC066654:83 AB073711:89 KJ893343:89 AB383913:90 ENST00000445478.6:-92 uc002jsn.2:-92 AK294816:-92 ENST00000542934.5:-197 ENST00000303996.10:-197 uc060kmc.1:-197 uc060kmd.1:-197 EF527406:-197 EF527407:-197 ENST00000617192.4:-212 NM_001081461:-212 NM_015167:-212 uc060kmb.1:-212
+
|all_trans=HGNC:19355
 
|chr=chr17
 
|chr=chr17
 
|cpg_percent=0.115
 
|cpg_percent=0.115
 
|distance=0
 
|distance=0
|distance_to_tss=224
+
|distance_to_tss=31
 
|end=76726587
 
|end=76726587
 
|end_of_center_position=76726576
 
|end_of_center_position=76726576
 
|entrez_id=23210
 
|entrez_id=23210
 
|gc_percent=0.681592
 
|gc_percent=0.681592
|gene_alias=PSR
+
|gene_alias=PSR{{!}}PTDSR{{!}}PTDSR1
|gene_description=arginine demethylase and lysine hydroxylase
+
|gene_description=jumonji domain containing 6, arginine demethylase and lysine hydroxylase
 
|gene_id=23210
 
|gene_id=23210
|gene_name=jumonji domain containing 6
+
|gene_name=jumonji domain containing 6, arginine demethylase and lysine hydroxylase
 
|gene_source=HGNC:19355
 
|gene_source=HGNC:19355
 
|gene_symbol=JMJD6
 
|gene_symbol=JMJD6
Line 21: Line 21:
 
|hgnc_mgi_id=HGNC:19355
 
|hgnc_mgi_id=HGNC:19355
 
|nearest_ensembl=ENSG00000070495
 
|nearest_ensembl=ENSG00000070495
|nearest_promoter_id=NM_015167
+
|nearest_promoter_id=NM_001081461
 
|nearest_refseq=NM_015167
 
|nearest_refseq=NM_015167
 
|nearest_unigene=Hs.514505
 
|nearest_unigene=Hs.514505
|num_trans=25
+
|num_trans=23210
 
|species=human
 
|species=human
 
|start=76726563
 
|start=76726563
 
|start_of_center_position=76726575
 
|start_of_center_position=76726575
 
|strand=-
 
|strand=-
|tata_box="-38(CGACTTTAAAGG,-,0.00),-37(GACTTTAAAGGC,-,0.00),-36(ACTTTAAAGGCG,+,0.00)"
+
|tata_box=-38(CGACTTTAAAGG,-,0.00),-37(GACTTTAAAGGC,-,0.00),-36(ACTTTAAAGGCG,+,0.00)
 
|transcript_name=AK021780
 
|transcript_name=AK021780
 
|tss_classification=yes
 
|tss_classification=yes

Latest revision as of 18:21, 20 July 2021

Basic information about the TSS


TSS ID:hg_168280.1
Species:human
Chr:chr17
TSS Classification:yes
Start:76726563
End:76726587
Strand:-
TSS Score:1
Start of the center position in the TSS region:76726575
End of the center position in the TSS region:76726576



Gene and protein annotation


Transcript_name:AK021780
Distance:0
GeneID:23210
HGNC/MGI_ID:HGNC:19355
UniProt_ID:
Gene_name:jumonji domain containing 6, arginine demethylase and lysine hydroxylase
Gene_symbol:JMJD6
Gene_synonyms:KIAA0585 PTDSR1
Gene_source:HGNC:19355



Transcript annotation


Transcript_name:AK021780
Distance:0
Num_trans:23210
All_trans:HGNC:19355



TATA-Box annotation


Distance to TSS:31
Nearest PromoterID:NM_001081461
Entrez ID:23210
Nearest Unigene:Hs.514505
Nearest Refseq:NM_015167
Nearest Ensembl:ENSG00000070495
Gene Name:jumonji domain containing 6, arginine demethylase and lysine hydroxylase
Gene Alias:PSR|PTDSR|PTDSR1
Gene Description:jumonji domain containing 6, arginine demethylase and lysine hydroxylase
Gene Type:protein-coding
CpG%:0.115
GC%:0.681592
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):-38(CGACTTTAAAGG,-,0.00),-37(GACTTTAAAGGC,-,0.00),-36(ACTTTAAAGGCG,+,0.00)