Difference between revisions of "TSS:Hg 106037.1"
From referenceTSS
| Line 8: | Line 8: | ||
|PTEN1= | |PTEN1= | ||
|TEP1= | |TEP1= | ||
| − | |all_trans= | + | |all_trans=HGNC:9588 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| Line 30: | Line 30: | ||
|nearest_refseq=NM_000314 | |nearest_refseq=NM_000314 | ||
|nearest_unigene=Hs.500466 | |nearest_unigene=Hs.500466 | ||
| − | |num_trans= | + | |num_trans=5728 |
|species=human | |species=human | ||
|start=87863582 | |start=87863582 | ||
| Line 36: | Line 36: | ||
|strand=+ | |strand=+ | ||
|tata_box=-18(CTCTTTATGCGC,+,0.00) | |tata_box=-18(CTCTTTATGCGC,+,0.00) | ||
| − | |transcript_name=ENST00000371953.8 | + | |transcript_name=ENST00000371953.8 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106037.1 | |tss_id=hg_106037.1 | ||
Latest revision as of 19:44, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 87863587 |
|---|---|
| End of the center position in the TSS region: | 87863588 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000371953.8 |
|---|---|
| Distance: | 32 |
| Num_trans: | 5728 |
| All_trans: | HGNC:9588 |
TATA-Box annotation
| Distance to TSS: | -37 |
|---|---|
| Nearest PromoterID: | NM_001304717 |
| Entrez ID: | 5728 |
| Nearest Unigene: | Hs.500466 |
| Nearest Refseq: | NM_000314 |
| Nearest Ensembl: | ENSG00000171862 |
| Gene Name: | phosphatase and tensin homolog |
| Gene Alias: | 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 |
| Gene Description: | phosphatase and tensin homolog |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -18(CTCTTTATGCGC,+,0.00) |
