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Difference between revisions of "TSS:Hg 11867.1"

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Line 2: Line 2:
 
|APP1=
 
|APP1=
 
|PABP4=
 
|PABP4=
|all_trans=ENST00000372858.8:114 ENST00000451091.2:114 NM_001135653:114 NM_001135654:114 NM_003819:114 BC094755:114 ENST00000531243.2:117 BC071591:119 ENST00000372856.7:153 BC065540:153 ENST00000372857.7:160 U75686:160
+
|all_trans=HGNC:8557
 
|chr=chr1
 
|chr=chr1
 
|cpg_percent=0.17
 
|cpg_percent=0.17
Line 25: Line 25:
 
|nearest_refseq=NM_003819
 
|nearest_refseq=NM_003819
 
|nearest_unigene=Hs.169900
 
|nearest_unigene=Hs.169900
|num_trans=12
+
|num_trans=8761
 
|species=human
 
|species=human
 
|start=39576903
 
|start=39576903
Line 31: Line 31:
 
|strand=-
 
|strand=-
 
|tata_box=84(GGGTATAAATGG,-,0.00)
 
|tata_box=84(GGGTATAAATGG,-,0.00)
|transcript_name=ENST00000372858.8 ENST00000451091.2 NM_001135653 NM_001135654 NM_003819 BC094755
+
|transcript_name=ENST00000372858.8 ENST00000451091.2 BC094755
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_11867.1
 
|tss_id=hg_11867.1

Latest revision as of 00:19, 20 July 2021

Basic information about the TSS


TSS ID:hg_11867.1
Species:human
Chr:chr1
TSS Classification:yes
Start:39576903
End:39576910
Strand:-
TSS Score:1
Start of the center position in the TSS region:39576906
End of the center position in the TSS region:39576907



Gene and protein annotation


Transcript_name:ENST00000372858.8 ENST00000451091.2 BC094755
Distance:114
GeneID:8761
HGNC/MGI_ID:HGNC:8557
UniProt_ID:B1ANR1 Q13310
Gene_name:poly(A) binding protein cytoplasmic 4
Gene_symbol:PABPC4
Gene_synonyms:APP-1 iPABP
Gene_source:HGNC:8557



Transcript annotation


Transcript_name:ENST00000372858.8 ENST00000451091.2 BC094755
Distance:114
Num_trans:8761
All_trans:HGNC:8557



TATA-Box annotation


Distance to TSS:-117
Nearest PromoterID:NM_001135654
Entrez ID:8761
Nearest Unigene:Hs.169900
Nearest Refseq:NM_003819
Nearest Ensembl:ENSG00000090621
Gene Name:poly(A) binding protein cytoplasmic 4
Gene Alias:APP-1|APP1|PABP4|iPABP
Gene Description:poly(A) binding protein cytoplasmic 4
Gene Type:protein-coding
CpG%:0.17
GC%:0.80597
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):84(GGGTATAAATGG,-,0.00)