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Difference between revisions of "TSS:Hg 125894.1"

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Line 5: Line 5:
 
|IBMPFD3=
 
|IBMPFD3=
 
|UP 1=
 
|UP 1=
−
|all_trans=ENST00000677220.1:0 AB463728:0 KJ891371:0 CU677924:0 U00947:-5 ENST00000678077.1:7 BC012158:-18 X79536:-23 ENST00000678690.1:-25 ENST00000678919.1:-25 ENST00000547276.5:-25 BC020442:-25 BC103707:-25 BC052296:-27 ENST00000676794.1:-30 ENST00000330752.12:-30 ENST00000678365.1:-30 BC002355:-36 BC033714:-36 BC074502:-39 BC121133:-41 BC073162:-41 ENST00000551702.5:-42 BC078165:-42 BC071945:-47 ENST00000547870.2:-49 AK291113:-55 ENST00000679228.1:-56 ENST00000547708.5:-57 ENST00000547566.5:-57 AK303303:-57 AK308679:-57 AK129814:-57 X06747:-57 BC070315:-57 AK298176:-58 BC009600:-58 GQ900890:-58 ENST00000679101.1:-79 ENST00000340913.11:-79 NM_002136:-79 NR_135167:-79 NM_031157:-79 ENST00000550482.2:-101 ENST00000678418.1:-107 ENST00000676725.1:-107 ENST00000677249.1:-114 ENST00000548688.5:141 ENST00000677375.1:-142 ENST00000677210.1:-142 ENST00000677385.1:-142
+
|all_trans=HGNC:5031
 
|chr=chr12
 
|chr=chr12
 
|cpg_percent=0.065
 
|cpg_percent=0.065
Line 29: Line 29:
 
|nearest_refseq=NM_002136
 
|nearest_refseq=NM_002136
 
|nearest_unigene=Hs.546261
 
|nearest_unigene=Hs.546261
−
|num_trans=51
+
|num_trans=3178
 
|species=human
 
|species=human
 
|start=54280804
 
|start=54280804
 
|start_of_center_position=54280834
 
|start_of_center_position=54280834
 
|strand=+
 
|strand=+
−
|transcript_name=ENST00000677220.1 AB463728 KJ891371 CU677924
+
|transcript_name=ENST00000677220.1 AB463728
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_125894.1
 
|tss_id=hg_125894.1

Latest revision as of 02:57, 20 July 2021

Basic information about the TSS

TSS ID:hg_125894.1
Species:human
Chr:chr12
TSS Classification:yes
Start:54280804
End:54280865
Strand:+
TSS Score:1
Start of the center position in the TSS region:54280834
End of the center position in the TSS region:54280835



Gene and protein annotation

Transcript_name:ENST00000677220.1 AB463728
Distance:0
GeneID:3178
HGNC/MGI_ID:HGNC:5031
UniProt_ID:
Gene_name:heterogeneous nuclear ribonucleoprotein A1
Gene_symbol:HNRNPA1
Gene_synonyms:ALS20 hnRNP-A1
Gene_source:HGNC:5031



Transcript annotation

Transcript_name:ENST00000677220.1 AB463728
Distance:0
Num_trans:3178
All_trans:HGNC:5031



TATA-Box annotation

Distance to TSS:109
Nearest PromoterID:NM_002136
Entrez ID:3178
Nearest Unigene:Hs.546261
Nearest Refseq:NM_002136
Nearest Ensembl:ENSG00000135486
Gene Name:heterogeneous nuclear ribonucleoprotein A1
Gene Alias:ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|UP 1|hnRNP A1|hnRNP-A1
Gene Description:heterogeneous nuclear ribonucleoprotein A1
Gene Type:protein-coding
CpG%:0.065
GC%:0.532338
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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