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Difference between revisions of "TSS:Hg 134547.1"

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Line 7: Line 7:
 
|PDX-1=
 
|PDX-1=
 
|STF-1=
 
|STF-1=
|all_trans=BC111592:-102 AB464648:-103 U35632:-114 U30329:-120 X99894:-199 ENST00000381033.5:-239 NM_000209:-239
+
|all_trans=HGNC:6107
 
|chr=chr13
 
|chr=chr13
 
|cpg_percent=0.125
 
|cpg_percent=0.125
Line 29: Line 29:
 
|nearest_refseq=NM_000209
 
|nearest_refseq=NM_000209
 
|nearest_unigene=Hs.32938
 
|nearest_unigene=Hs.32938
|num_trans=7
+
|num_trans=3651
 
|species=human
 
|species=human
 
|start=27920238
 
|start=27920238

Latest revision as of 06:04, 20 July 2021

Basic information about the TSS


TSS ID:hg_134547.1
Species:human
Chr:chr13
TSS Classification:yes
Start:27920238
End:27920279
Strand:+
TSS Score:1
Start of the center position in the TSS region:27920258
End of the center position in the TSS region:27920259



Gene and protein annotation


Transcript_name:BC111592
Distance:-102
GeneID:3651
HGNC/MGI_ID:HGNC:6107
UniProt_ID:
Gene_name:pancreatic and duodenal homeobox 1
Gene_symbol:PDX1
Gene_synonyms:IDX-1 MODY4 PDX-1 STF-1
Gene_source:HGNC:6107



Transcript annotation


Transcript_name:BC111592
Distance:-102
Num_trans:3651
All_trans:HGNC:6107



TATA-Box annotation


Distance to TSS:259
Nearest PromoterID:NM_000209
Entrez ID:3651
Nearest Unigene:Hs.32938
Nearest Refseq:NM_000209
Nearest Ensembl:ENSG00000139515
Gene Name:pancreatic and duodenal homeobox 1
Gene Alias:GSF|IDX-1|IPF1|IUF1|MODY4|PAGEN1|PDX-1|STF-1
Gene Description:pancreatic and duodenal homeobox 1
Gene Type:protein-coding
CpG%:0.125
GC%:0.761194
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):