Difference between revisions of "TSS:Hg 185490.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:51599 |
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_131157 | |nearest_refseq=NR_131157 | ||
|nearest_unigene=Hs.628947 | |nearest_unigene=Hs.628947 | ||
| − | |num_trans= | + | |num_trans=105416157 |
|species=human | |species=human | ||
|start=57710153 | |start=57710153 | ||
| Line 28: | Line 28: | ||
|strand=+ | |strand=+ | ||
|tata_box=-26(GGCTCTTAAAGG,-,0.00),-25(GCTCTTAAAGGG,+,0.00),-25(GCTCTTAAAGGG,-,0.00),-24(CTCTTAAAGGGC,+,0.00),-23(TCTTAAAGGGCC,+,0.00) | |tata_box=-26(GGCTCTTAAAGG,-,0.00),-25(GCTCTTAAAGGG,+,0.00),-25(GCTCTTAAAGGG,-,0.00),-24(CTCTTAAAGGGC,+,0.00),-23(TCTTAAAGGGCC,+,0.00) | ||
| − | |transcript_name=ENST00000614771.2 ENST00000613231.1 | + | |transcript_name=ENST00000614771.2 ENST00000613231.1 AK056098 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_185490.1 | |tss_id=hg_185490.1 | ||
Latest revision as of 00:35, 21 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 57710174 |
|---|---|
| End of the center position in the TSS region: | 57710175 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000614771.2 ENST00000613231.1 AK056098 |
|---|---|
| Distance: | 0 |
| Num_trans: | 105416157 |
| All_trans: | HGNC:51599 |
TATA-Box annotation
| Distance to TSS: | -8 |
|---|---|
| Nearest PromoterID: | NR_131157 |
| Entrez ID: | 105416157 |
| Nearest Unigene: | Hs.628947 |
| Nearest Refseq: | NR_131157 |
| Nearest Ensembl: | ENSG00000278709 |
| Gene Name: | NF-kappaB interacting lncRNA |
| Gene Alias: | - |
| Gene Description: | NF-kappaB interacting lncRNA |
| Gene Type: | ncRNA |
| CpG%: | 0.125 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -26(GGCTCTTAAAGG,-,0.00),-25(GCTCTTAAAGGG,+,0.00),-25(GCTCTTAAAGGG,-,0.00),-24(CTCTTAAAGGGC,+,0.00),-23(TCTTAAAGGGCC,+,0.00) |
