Difference between revisions of "TSS:Hg 232303.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 2: | Line 2: | ||
|PDZK4= | |PDZK4= | ||
|PDZK5C= | |PDZK5C= | ||
| − | |all_trans= | + | |all_trans=HGNC:20773 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=70 | |distance=70 | ||
|distance_to_tss=32 | |distance_to_tss=32 | ||
| − | |end= | + | |end=49366 |
|end_of_center_position=49366 | |end_of_center_position=49366 | ||
|entrez_id=143162 | |entrez_id=143162 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_152428 | |nearest_refseq=NM_152428 | ||
|nearest_unigene=Hs.664786 | |nearest_unigene=Hs.664786 | ||
| − | |num_trans= | + | |num_trans=347688 |
|species=human | |species=human | ||
| − | |start= | + | |start=49365 |
|start_of_center_position=49365 | |start_of_center_position=49365 | ||
|strand=- | |strand=- | ||
|tata_box=-62(GCTTTTATATCC,+,0.00) | |tata_box=-62(GCTTTTATATCC,+,0.00) | ||
| − | |transcript_name=ENST00000568584.6 | + | |transcript_name=ENST00000568584.6 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_232303.1 | |tss_id=hg_232303.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q3ZCM7 | |uniprot_id=Q3ZCM7 | ||
}} | }} | ||
Latest revision as of 11:07, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 49365 |
|---|---|
| End of the center position in the TSS region: | 49366 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000568584.6 |
|---|---|
| Distance: | 70 |
| Num_trans: | 347688 |
| All_trans: | HGNC:20773 |
TATA-Box annotation
| Distance to TSS: | 32 |
|---|---|
| Nearest PromoterID: | NM_001042512 |
| Entrez ID: | 143162 |
| Nearest Unigene: | Hs.664786 |
| Nearest Refseq: | NM_152428 |
| Nearest Ensembl: | ENSG00000170324 |
| Gene Name: | tubulin beta 8 class VIII |
| Gene Alias: | PDZD5C|PDZK4|PDZK5C |
| Gene Description: | FERM and PDZ domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -62(GCTTTTATATCC,+,0.00) |
