Difference between revisions of "TSS:Hg 233162.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|SCA21= | |SCA21= | ||
| − | |all_trans= | + | |all_trans=HGNC:10840 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance=38 | |distance=38 | ||
|distance_to_tss=-1095 | |distance_to_tss=-1095 | ||
| − | |end= | + | |end=154968619 |
|end_of_center_position=154968619 | |end_of_center_position=154968619 | ||
|entrez_id=339453 | |entrez_id=339453 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_001114748 | |nearest_refseq=NM_001114748 | ||
|nearest_unigene=Hs.668654 | |nearest_unigene=Hs.668654 | ||
| − | |num_trans= | + | |num_trans=6464 |
|species=human | |species=human | ||
| − | |start= | + | |start=154968618 |
|start_of_center_position=154968618 | |start_of_center_position=154968618 | ||
|strand=- | |strand=- | ||
|transcript_name=AB208849 | |transcript_name=AB208849 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_233162.1 | |tss_id=hg_233162.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q59HB0 | |uniprot_id=Q59HB0 | ||
}} | }} | ||
Latest revision as of 11:26, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 154968618 |
|---|---|
| End of the center position in the TSS region: | 154968619 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AB208849 |
|---|---|
| Distance: | 38 |
| Num_trans: | 6464 |
| All_trans: | HGNC:10840 |
TATA-Box annotation
| Distance to TSS: | -1095 |
|---|---|
| Nearest PromoterID: | NM_001114748 |
| Entrez ID: | 339453 |
| Nearest Unigene: | Hs.668654 |
| Nearest Refseq: | NM_001114748 |
| Nearest Ensembl: | ENSG00000205090 |
| Gene Name: | SHC adaptor protein 1 |
| Gene Alias: | C1orf70|SCA21 |
| Gene Description: | transmembrane protein 240 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
