Difference between revisions of "TSS:Hg 236133.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:25701 |
| − | |chr= | + | |chr=chr16 |
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=-12 | |distance=-12 | ||
|distance_to_tss=-1741 | |distance_to_tss=-1741 | ||
| − | |end= | + | |end=53238380 |
|end_of_center_position=53238380 | |end_of_center_position=53238380 | ||
|entrez_id=101928626 | |entrez_id=101928626 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_125957 | |nearest_refseq=NR_125957 | ||
|nearest_unigene=Hs.637667 | |nearest_unigene=Hs.637667 | ||
| − | |num_trans= | + | |num_trans=80205 |
|species=human | |species=human | ||
| − | |start= | + | |start=53238379 |
|start_of_center_position=53238379 | |start_of_center_position=53238379 | ||
|strand=+ | |strand=+ | ||
|tata_box=-90(CCTTTTATGCTA,+,0.00) | |tata_box=-90(CCTTTTATGCTA,+,0.00) | ||
|transcript_name=AB528593 | |transcript_name=AB528593 | ||
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_236133.1 | |tss_id=hg_236133.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 12:31, 21 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 53238379 |
|---|---|
| End of the center position in the TSS region: | 53238380 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AB528593 |
|---|---|
| Distance: | -12 |
| Num_trans: | 80205 |
| All_trans: | HGNC:25701 |
TATA-Box annotation
| Distance to TSS: | -1741 |
|---|---|
| Nearest PromoterID: | NR_125957 |
| Entrez ID: | 101928626 |
| Nearest Unigene: | Hs.637667 |
| Nearest Refseq: | NR_125957 |
| Nearest Ensembl: | ENSG00000230021 |
| Gene Name: | chromodomain helicase DNA binding protein 9 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC101928626 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.393035 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -90(CCTTTTATGCTA,+,0.00) |
