Difference between revisions of "TSS:Hg 239176.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans=KJ903875:-37 HQ258521:-38 KJ903876:-38 BC090854:375 | |all_trans=KJ903875:-37 HQ258521:-38 KJ903876:-38 BC090854:375 | ||
| − | |chr= | + | |chr=chr2 |
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=-37 | |distance=-37 | ||
|distance_to_tss=-3 | |distance_to_tss=-3 | ||
| − | |end= | + | |end=210154546 |
|end_of_center_position=210154546 | |end_of_center_position=210154546 | ||
|entrez_id=106632260 | |entrez_id=106632260 | ||
| Line 24: | Line 24: | ||
|num_trans=4 | |num_trans=4 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=210154545 |
|start_of_center_position=210154545 | |start_of_center_position=210154545 | ||
| − | |strand= | + | |strand=- |
|transcript_name=KJ903875 | |transcript_name=KJ903875 | ||
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_239176.1 | |tss_id=hg_239176.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 11:13, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 210154545 |
|---|---|
| End of the center position in the TSS region: | 210154546 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | KJ903875 |
|---|---|
| Distance: | -37 |
| Num_trans: | 4 |
| All_trans: | KJ903875:-37 HQ258521:-38 KJ903876:-38 BC090854:375 |
TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NR_145821 |
| Entrez ID: | 106632260 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_145821 |
| Nearest Ensembl: | ENSG00000278189 |
| Gene Name: | RNA5-8SN1 |
| Gene Alias: | RNA5-8S4 |
| Gene Description: | RNA, 5.8S ribosomal N1 |
| Gene Type: | rRNA |
| CpG%: | 0.105 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
