Difference between revisions of "TSS:Hg 111982.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=-149494 |entrez_id=118611 |gc_percent=0.427861 |gene_alias=FATS|bA422P15.2 |gene_description=chromosome 10 open reading frame 90...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NR_146939:238 NM_001350921:238 NM_001350922:238 NM_001350923:238 AK297577:421 ENST00000488181.2:485 | ||
| + | |bA422P15.2= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance_to_tss=- | + | |distance=238 |
| + | |distance_to_tss=-425 | ||
| + | |end=126670940 | ||
| + | |end_of_center_position=126670936 | ||
|entrez_id=118611 | |entrez_id=118611 | ||
|gc_percent=0.427861 | |gc_percent=0.427861 | ||
| − | |gene_alias=FATS | + | |gene_alias=FATS{{!}}bA422P15.2 |
|gene_description=chromosome 10 open reading frame 90 | |gene_description=chromosome 10 open reading frame 90 | ||
| − | |gene_name=C10orf90 | + | |gene_id=118611 |
| + | |gene_name=chromosome 10 open reading frame 90 | ||
| + | |gene_source=HGNC:26563 | ||
| + | |gene_symbol=C10orf90 | ||
| + | |gene_synonyms=FATS FLJ32938 bA422P15.2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:26563 | ||
|nearest_ensembl=ENSG00000154493 | |nearest_ensembl=ENSG00000154493 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001350922 |
|nearest_refseq=NM_001004298 | |nearest_refseq=NM_001004298 | ||
|nearest_unigene=Hs.587663 | |nearest_unigene=Hs.587663 | ||
| + | |num_trans=6 | ||
| + | |species=human | ||
| + | |start=126670930 | ||
| + | |start_of_center_position=126670935 | ||
| + | |strand=- | ||
| + | |transcript_name=NM_001350921.2 NM_001350922.2 NR_146939.2 NM_001350923.2 | ||
| + | |tss_classification=no | ||
|tss_id=hg_111982.1 | |tss_id=hg_111982.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 21:53, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 126670935 |
|---|---|
| End of the center position in the TSS region: | 126670936 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_001350921.2 NM_001350922.2 NR_146939.2 NM_001350923.2 |
|---|---|
| Distance: | 238 |
| Num_trans: | 6 |
| All_trans: | NR_146939:238 NM_001350921:238 NM_001350922:238 NM_001350923:238 AK297577:421 ENST00000488181.2:485 |
TATA-Box annotation
| Distance to TSS: | -425 |
|---|---|
| Nearest PromoterID: | NM_001350922 |
| Entrez ID: | 118611 |
| Nearest Unigene: | Hs.587663 |
| Nearest Refseq: | NM_001004298 |
| Nearest Ensembl: | ENSG00000154493 |
| Gene Name: | chromosome 10 open reading frame 90 |
| Gene Alias: | FATS|bA422P15.2 |
| Gene Description: | chromosome 10 open reading frame 90 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.427861 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
