Personal tools

Difference between revisions of "TSS:Mm 168321.1"

From referenceTSS

Jump to: navigation, search
 
Line 3: Line 3:
 
|Ts=
 
|Ts=
 
|Tss=
 
|Tss=
|all_trans=ENSMUST00000082092.4:-16 BC047046:-25 ENSMUST00000106599.7:-33 AK010277:-35 AK151517:-35 BC034339:-38 AK010518:-51 AK012391:-51 BC055346:-51 NM_001048058:-62 NM_001048057:-62 NM_001362918:-62 NM_023372:-62 AK002659:-64 ENSMUST00000077915.9:-94 ENSMUST00000106602.9:-118 AB037665:-118 BC094258:139 BC094644:139 BC081447:155
+
|all_trans=MGI:1914921
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.105
 
|cpg_percent=0.105
Line 25: Line 25:
 
|nearest_refseq=NM_023372
 
|nearest_refseq=NM_023372
 
|nearest_unigene=Mm.238817
 
|nearest_unigene=Mm.238817
|num_trans=20
+
|num_trans=67671
 
|species=mouse
 
|species=mouse
 
|start=114668641
 
|start=114668641

Latest revision as of 11:29, 27 July 2021

Basic information about the TSS


TSS ID:mm_168321.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:114668641
End:114668642
Strand:+
TSS Score:1
Start of the center position in the TSS region:114668641
End of the center position in the TSS region:114668642



Gene and protein annotation


Transcript_name:ENSMUST00000082092.4
Distance:-16
GeneID:67671
HGNC/MGI_ID:MGI:1914921
UniProt_ID:Q52KP0
Gene_name:ribosomal protein L38
Gene_symbol:Rpl38
Gene_synonyms:0610025G13Rik Rbt Ts Tss
Gene_source:MGI:1914921



Transcript annotation


Transcript_name:ENSMUST00000082092.4
Distance:-16
Num_trans:67671
All_trans:MGI:1914921



TATA-Box annotation


Distance to TSS:62
Nearest PromoterID:NM_001048058
Entrez ID:67671
Nearest Unigene:Mm.238817
Nearest Refseq:NM_023372
Nearest Ensembl:ENSMUSG00000057322
Gene Name:ribosomal protein L38
Gene Alias:0610025G13Rik|Rbt|Ts|Tss
Gene Description:ribosomal protein L38
Gene Type:protein-coding
CpG%:0.105
GC%:0.681592
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):