Difference between revisions of "TSS:Hg 219988.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000380433.4:98 uc001ihx.2:98 NM_053049:102 BC100867:181 BC100868:181 BC100869:181 BC100870:181 |chr=chr10 |cpg_percent=0.04 |distance=98 |distance...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |SPC= |
| + | |UCNIII= | ||
| + | |all_trans=HGNC:17781 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=55 |
| − | |distance_to_tss=- | + | |distance_to_tss=-55 |
|end=5364911 | |end=5364911 | ||
| + | |end_of_center_position=5364911 | ||
|entrez_id=114131 | |entrez_id=114131 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
| − | |gene_alias=SCP | + | |gene_alias=SCP{{!}}SPC{{!}}UCNIII |
|gene_description=urocortin 3 | |gene_description=urocortin 3 | ||
|gene_id=114131 | |gene_id=114131 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_053049 | |nearest_refseq=NM_053049 | ||
|nearest_unigene=Hs.511775 | |nearest_unigene=Hs.511775 | ||
| − | |num_trans= | + | |num_trans=114131 |
|species=human | |species=human | ||
|start=5364910 | |start=5364910 | ||
| + | |start_of_center_position=5364910 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000380433. | + | |transcript_name=ENST00000380433.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_219988.1 | |tss_id=hg_219988.1 | ||
Latest revision as of 07:24, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 5364910 |
|---|---|
| End of the center position in the TSS region: | 5364911 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000380433.5 |
|---|---|
| Distance: | 55 |
| Num_trans: | 114131 |
| All_trans: | HGNC:17781 |
TATA-Box annotation
| Distance to TSS: | -55 |
|---|---|
| Nearest PromoterID: | NM_053049 |
| Entrez ID: | 114131 |
| Nearest Unigene: | Hs.511775 |
| Nearest Refseq: | NM_053049 |
| Nearest Ensembl: | ENSG00000178473 |
| Gene Name: | urocortin 3 |
| Gene Alias: | SCP|SPC|UCNIII |
| Gene Description: | urocortin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
