Difference between revisions of "TSS:Hg 220150.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000371380.7:8 uc057uyg.1:8 AF190642:8 BC140705:183 BC144286:183 AB384613:243 |chr=chr10 |cpg_percent=0.005 |distance=8 |distance_to_tss=36815 |end...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |PLCE= |
| + | |PPLC= | ||
| + | |all_trans=HGNC:17175 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=8 | |distance=8 | ||
| − | |distance_to_tss= | + | |distance_to_tss=36873 |
|end=94030804 | |end=94030804 | ||
| + | |end_of_center_position=94030804 | ||
|entrez_id=51196 | |entrez_id=51196 | ||
|gc_percent=0.328358 | |gc_percent=0.328358 | ||
| − | |gene_alias=NPHS3 | + | |gene_alias=NPHS3{{!}}PLCE{{!}}PPLC |
|gene_description=phospholipase C epsilon 1 | |gene_description=phospholipase C epsilon 1 | ||
|gene_id=51196 | |gene_id=51196 | ||
| Line 18: | Line 21: | ||
|hgnc_mgi_id=HGNC:17175 | |hgnc_mgi_id=HGNC:17175 | ||
|nearest_ensembl=ENSG00000138193 | |nearest_ensembl=ENSG00000138193 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_016341 |
|nearest_refseq=NM_016341 | |nearest_refseq=NM_016341 | ||
|nearest_unigene=Hs.655033 | |nearest_unigene=Hs.655033 | ||
| − | |num_trans= | + | |num_trans=51196 |
|species=human | |species=human | ||
|start=94030803 | |start=94030803 | ||
| + | |start_of_center_position=94030803 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=83(GCCTCTTAATGC,-,0.00) |
| − | |transcript_name= | + | |transcript_name=AF190642 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_220150.1 | |tss_id=hg_220150.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Latest revision as of 07:26, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 94030803 |
|---|---|
| End of the center position in the TSS region: | 94030804 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF190642 |
|---|---|
| Distance: | 8 |
| Num_trans: | 51196 |
| All_trans: | HGNC:17175 |
TATA-Box annotation
| Distance to TSS: | 36873 |
|---|---|
| Nearest PromoterID: | NM_016341 |
| Entrez ID: | 51196 |
| Nearest Unigene: | Hs.655033 |
| Nearest Refseq: | NM_016341 |
| Nearest Ensembl: | ENSG00000138193 |
| Gene Name: | phospholipase C epsilon 1 |
| Gene Alias: | NPHS3|PLCE|PPLC |
| Gene Description: | phospholipase C epsilon 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.328358 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 83(GCCTCTTAATGC,-,0.00) |
