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Difference between revisions of "TSS:Hg 226396.1"

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(Created page with "{{TSSDetail |all_trans=AK055038:11 ENST00000563317.5:12 ENST00000568464.5:12 ENST00000563022.5:12 ENST00000562930.5:12 ENST00000563978.5:12 ENST00000569923.5:12 ENST0000035675...")
 
 
(2 intermediate revisions by the same user not shown)
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{{TSSDetail
 
{{TSSDetail
−
|all_trans=AK055038:11 ENST00000563317.5:12 ENST00000568464.5:12 ENST00000563022.5:12 ENST00000562930.5:12 ENST00000563978.5:12 ENST00000569923.5:12 ENST00000356752.8:12 ENST00000563799.5:12 ENST00000562999.5:12 ENST00000570248.5:12 NM_001242834:12 NR_040072:12 NM_001242836:12 NM_001242835:12 NM_001242833:12 uc059vbr.1:12 uc059vbs.1:12 uc059vbt.1:12 uc059vbu.1:12 uc059vbv.1:12 uc010vih.3:12 uc010vig.3:12 uc010cdk.4:12 uc059vbw.1:12 uc002eno.4:12 AK296415:12 AK316089:12 AK299949:12 AK131248:12 AB044944:12 AB044945:12 ENST00000562731.5:14 ENST00000566585.5:14 ENST00000564960.1:14 uc059vbx.1:14 uc059vby.1:14 uc059vbz.1:14 ENST00000568424.1:15 uc059vca.1:15 ENST00000568640.5:-19 uc010vii.3:-19 BC011795:24 AB033006:26 AL136584:26 BC001527:28 AF308608:29 ENST00000565088.5:-36 uc059vbq.1:-36 ENST00000566192.5:-79 uc002enp.4:-79 AB385436:118 AM393094:118 AM393323:118 KJ903114:118 KU178760:118 KU178761:118
+
|SMAP-8=
 +
|SMAP8=
 +
|all_trans=HGNC:14466
 
|chr=chr16
 
|chr=chr16
 
|cpg_percent=0.03
 
|cpg_percent=0.03
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|distance_to_tss=-15
 
|distance_to_tss=-15
 
|end=58500131
 
|end=58500131
 +
|end_of_center_position=58500129
 
|entrez_id=65009
 
|entrez_id=65009
 
|gc_percent=0.631841
 
|gc_percent=0.631841
−
|gene_alias=BDM1|SMAP-8|SMAP8
+
|gene_alias=BDM1{{!}}SMAP-8{{!}}SMAP8
 
|gene_description=NDRG family member 4
 
|gene_description=NDRG family member 4
 
|gene_id=65009
 
|gene_id=65009
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|nearest_refseq=NM_020465
 
|nearest_refseq=NM_020465
 
|nearest_unigene=Hs.322430
 
|nearest_unigene=Hs.322430
−
|num_trans=57
+
|num_trans=65009
 
|species=human
 
|species=human
 
|start=58500125
 
|start=58500125
 +
|start_of_center_position=58500128
 
|strand=+
 
|strand=+
−
|tata_box="-17(CTGTATAAATGG,-,0.00)"
+
|tata_box=-17(CTGTATAAATGG,-,0.00)
 
|transcript_name=AK055038
 
|transcript_name=AK055038
 
|tss_classification=yes
 
|tss_classification=yes

Latest revision as of 09:03, 21 July 2021

Basic information about the TSS

TSS ID:hg_226396.1
Species:human
Chr:chr16
TSS Classification:yes
Start:58500125
End:58500131
Strand:+
TSS Score:1
Start of the center position in the TSS region:58500128
End of the center position in the TSS region:58500129



Gene and protein annotation

Transcript_name:AK055038
Distance:11
GeneID:65009
HGNC/MGI_ID:HGNC:14466
UniProt_ID:
Gene_name:NDRG family member 4
Gene_symbol:NDRG4
Gene_synonyms:KIAA1180 SMAP-8
Gene_source:HGNC:14466



Transcript annotation

Transcript_name:AK055038
Distance:11
Num_trans:65009
All_trans:HGNC:14466



TATA-Box annotation

Distance to TSS:-15
Nearest PromoterID:NM_001242835
Entrez ID:65009
Nearest Unigene:Hs.322430
Nearest Refseq:NM_020465
Nearest Ensembl:ENSG00000103034
Gene Name:NDRG family member 4
Gene Alias:BDM1|SMAP-8|SMAP8
Gene Description:NDRG family member 4
Gene Type:protein-coding
CpG%:0.03
GC%:0.631841
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):-17(CTGTATAAATGG,-,0.00)
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