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Difference between revisions of "TSS:Hg 226397.1"

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(Created page with "{{TSSDetail |all_trans=AF308608:-37 BC001527:-38 AB033006:-40 AL136584:-40 BC011795:-42 AB385436:46 AM393094:46 AM393323:46 KJ903114:46 KU178760:46 KU178761:46 ENST00000568424...")
 
 
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{{TSSDetail
 
{{TSSDetail
−
|all_trans=AF308608:-37 BC001527:-38 AB033006:-40 AL136584:-40 BC011795:-42 AB385436:46 AM393094:46 AM393323:46 KJ903114:46 KU178760:46 KU178761:46 ENST00000568424.1:-51 uc059vca.1:-51 ENST00000562731.5:-52 ENST00000566585.5:-52 ENST00000564960.1:-52 uc059vbx.1:-52 uc059vby.1:-52 uc059vbz.1:-52 ENST00000563317.5:-54 ENST00000568464.5:-54 ENST00000563022.5:-54 ENST00000562930.5:-54 ENST00000563978.5:-54 ENST00000569923.5:-54 ENST00000356752.8:-54 ENST00000563799.5:-54 ENST00000562999.5:-54 ENST00000570248.5:-54 NM_001242834:-54 NR_040072:-54 NM_001242836:-54 NM_001242835:-54 NM_001242833:-54 uc059vbr.1:-54 uc059vbs.1:-54 uc059vbt.1:-54 uc059vbu.1:-54 uc059vbv.1:-54 uc010vih.3:-54 uc010vig.3:-54 uc010cdk.4:-54 uc059vbw.1:-54 uc002eno.4:-54 AK296415:-54 AK316089:-54 AK299949:-54 AK131248:-54 AB044944:-54 AB044945:-54 AK055038:-55 ENST00000568640.5:-90 uc010vii.3:-90 ENST00000565088.5:-107 uc059vbq.1:-107 ENST00000566192.5:-150 uc002enp.4:-150
+
|SMAP-8=
 +
|SMAP8=
 +
|all_trans=HGNC:14466
 
|chr=chr16
 
|chr=chr16
 
|cpg_percent=0.045
 
|cpg_percent=0.045
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|distance_to_tss=57
 
|distance_to_tss=57
 
|end=58500203
 
|end=58500203
 +
|end_of_center_position=58500200
 
|entrez_id=65009
 
|entrez_id=65009
 
|gc_percent=0.641791
 
|gc_percent=0.641791
−
|gene_alias=BDM1|SMAP-8|SMAP8
+
|gene_alias=BDM1{{!}}SMAP-8{{!}}SMAP8
 
|gene_description=NDRG family member 4
 
|gene_description=NDRG family member 4
 
|gene_id=65009
 
|gene_id=65009
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|nearest_refseq=NM_020465
 
|nearest_refseq=NM_020465
 
|nearest_unigene=Hs.322430
 
|nearest_unigene=Hs.322430
−
|num_trans=57
+
|num_trans=65009
 
|species=human
 
|species=human
 
|start=58500196
 
|start=58500196
 +
|start_of_center_position=58500199
 
|strand=+
 
|strand=+
−
|tata_box="-89(CTGTATAAATGG,-,0.00)"
+
|tata_box=-89(CTGTATAAATGG,-,0.00)
 
|transcript_name=AF308608
 
|transcript_name=AF308608
 
|tss_classification=yes
 
|tss_classification=yes

Latest revision as of 09:03, 21 July 2021

Basic information about the TSS

TSS ID:hg_226397.1
Species:human
Chr:chr16
TSS Classification:yes
Start:58500196
End:58500203
Strand:+
TSS Score:1
Start of the center position in the TSS region:58500199
End of the center position in the TSS region:58500200



Gene and protein annotation

Transcript_name:AF308608
Distance:-37
GeneID:65009
HGNC/MGI_ID:HGNC:14466
UniProt_ID:
Gene_name:NDRG family member 4
Gene_symbol:NDRG4
Gene_synonyms:KIAA1180 SMAP-8
Gene_source:HGNC:14466



Transcript annotation

Transcript_name:AF308608
Distance:-37
Num_trans:65009
All_trans:HGNC:14466



TATA-Box annotation

Distance to TSS:57
Nearest PromoterID:NM_001242836
Entrez ID:65009
Nearest Unigene:Hs.322430
Nearest Refseq:NM_020465
Nearest Ensembl:ENSG00000103034
Gene Name:NDRG family member 4
Gene Alias:BDM1|SMAP-8|SMAP8
Gene Description:NDRG family member 4
Gene Type:protein-coding
CpG%:0.045
GC%:0.641791
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):-89(CTGTATAAATGG,-,0.00)
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