Personal tools

Difference between revisions of "TSS:Mm 99425.1"

From referenceTSS

Jump to: navigation, search
 
Line 2: Line 2:
 
|Rap2ip=
 
|Rap2ip=
 
|Rpip8=
 
|Rpip8=
|all_trans=BC046319:-49 U73941:114 ENSMUST00000107105.8:-149 ENSMUST00000107102.7:-149 ENSMUST00000107103.7:-149 ENSMUST00000006750.7:-149 NM_016759:-149 NM_001252347:-149 NM_001362804:-149 NM_001362803:-149 LF198922:-150 MA434499:-150 LF230881:479 MA466458:479
+
|all_trans=MGI:1858752
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.105
 
|cpg_percent=0.105
Line 24: Line 24:
 
|nearest_refseq=NM_016759
 
|nearest_refseq=NM_016759
 
|nearest_unigene=Mm.2560
 
|nearest_unigene=Mm.2560
|num_trans=14
+
|num_trans=51799
 
|species=mouse
 
|species=mouse
 
|start=102393551
 
|start=102393551

Latest revision as of 19:26, 28 July 2021

Basic information about the TSS


TSS ID:mm_99425.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:102393551
End:102393562
Strand:+
TSS Score:1
Start of the center position in the TSS region:102393556
End of the center position in the TSS region:102393557



Gene and protein annotation


Transcript_name:BC046319
Distance:-49
GeneID:51799
HGNC/MGI_ID:MGI:1858752
UniProt_ID:
Gene_name:RUN domain containing 3A
Gene_symbol:Rundc3a
Gene_synonyms:Rap2ip Rpip8
Gene_source:MGI:1858752



Transcript annotation


Transcript_name:BC046319
Distance:-49
Num_trans:51799
All_trans:MGI:1858752



TATA-Box annotation


Distance to TSS:154
Nearest PromoterID:NM_001362804
Entrez ID:51799
Nearest Unigene:Mm.2560
Nearest Refseq:NM_016759
Nearest Ensembl:ENSMUSG00000006575
Gene Name:RUN domain containing 3A
Gene Alias:RPIP-8|Rap2ip|Rpip8
Gene Description:RUN domain containing 3A
Gene Type:protein-coding
CpG%:0.105
GC%:0.741294
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):