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Difference between revisions of "TSS:Hg 238111.1"

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{{TSSDetail
 
{{TSSDetail
−
|all_trans=ENST00000608263.5:-33 ENST00000426658.6:-33 ENST00000422109.6:-33 ENST00000432255.6:-33 ENST00000608720.5:-33 ENST00000607923.5:-33 ENST00000608158.5:-33 NM_001269041:-33 NM_001269044:-33 NR_072975:-33 NM_001269048:-33 NM_001269052:-33 DQ778110:-33 DQ778115:-33 DQ778116:-33 DQ778117:-33 DQ778118:-33 DQ778121:-33 DQ778119:-33 DQ778120:-33 DQ778114:-33 BC130486:-249 DQ778111:-264 AF336042:-264 DQ778124:-264 DQ778125:-264 DQ778126:-264 DQ778127:-264 DQ778128:-264 DQ778129:-264 ENST00000423479.7:-273 ENST00000502686.6:-273 ENST00000433949.7:-273 ENST00000539382.5:-273 ENST00000608903.5:-273 ENST00000608858.5:-273 ENST00000608108.1:-273 NM_001269043:-293 NM_001269054:-293 NM_001269049:-293 BC060763:-295 NM_001269050:-306 NM_001269055:-306 AK313990:-306 ENST00000243914.7:-375 AK128070:-375
+
|all_trans=HGNC:16234
 
|bA392M18.1=
 
|bA392M18.1=
 
|chr=chr20
 
|chr=chr20
Line 23: Line 23:
 
|nearest_refseq=NR_002781
 
|nearest_refseq=NR_002781
 
|nearest_unigene=Hs.647447
 
|nearest_unigene=Hs.647447
−
|num_trans=46
+
|num_trans=140690
 
|species=human
 
|species=human
 
|start=57524833
 
|start=57524833
 
|start_of_center_position=57524833
 
|start_of_center_position=57524833
 
|strand=-
 
|strand=-
−
|transcript_name=ENST00000608263.5 ENST00000426658.6 ENST00000422109.6 ENST00000432255.6 ENST00000608720.5 ENST00000607923.5 ENST00000608158.5 NM_001269041 NM_001269044 NR_072975 NM_001269048 NM_001269052 DQ778110 DQ778115 DQ778116 DQ778117 DQ778118 DQ778121 DQ778119 DQ778120 DQ778114
+
|transcript_name=ENST00000608263.5 ENST00000426658.6 ENST00000422109.6 ENST00000432255.6 ENST00000608720.5 ENST00000607923.5 ENST00000608158.5 DQ778110 DQ778115 DQ778116 DQ778117 DQ778118 DQ778121 DQ778119 DQ778120 DQ778114
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_238111.1
 
|tss_id=hg_238111.1

Latest revision as of 13:14, 21 July 2021

Basic information about the TSS

TSS ID:hg_238111.1
Species:human
Chr:chr20
TSS Classification:yes
Start:57524833
End:57524834
Strand:-
TSS Score:1
Start of the center position in the TSS region:57524833
End of the center position in the TSS region:57524834



Gene and protein annotation

Transcript_name:ENST00000608263.5 ENST00000426658.6 ENST00000422109.6 ENST00000432255.6 ENST00000608720.5 ENST00000607923.5 ENST00000608158.5 DQ778110 DQ778115 DQ778116 DQ778117 DQ778118 DQ778121 DQ778119 DQ778120 DQ778114
Distance:-33
GeneID:140690
HGNC/MGI_ID:HGNC:16234
UniProt_ID:A6XGM4 A6XGM5 F5H2V8 Q8NI51 V9GYX4 V9GZ46
Gene_name:CCCTC-binding factor like
Gene_symbol:CTCFL
Gene_synonyms:BORIS CT27 dJ579F20.2
Gene_source:HGNC:16234



Transcript annotation

Transcript_name:ENST00000608263.5 ENST00000426658.6 ENST00000422109.6 ENST00000432255.6 ENST00000608720.5 ENST00000607923.5 ENST00000608158.5 DQ778110 DQ778115 DQ778116 DQ778117 DQ778118 DQ778121 DQ778119 DQ778120 DQ778114
Distance:-33
Num_trans:140690
All_trans:HGNC:16234



TATA-Box annotation

Distance to TSS:30943
Nearest PromoterID:NR_002781
Entrez ID:128854
Nearest Unigene:Hs.647447
Nearest Refseq:NR_002781
Nearest Ensembl:ENSG00000235217
Gene Name:CCCTC-binding factor like
Gene Alias:TSPYL3|bA392M18.1
Gene Description:testis specific protein Y-linked 26, pseudogene
Gene Type:pseudo
CpG%:0.01
GC%:0.58209
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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