Difference between revisions of "TSS:Hg 232190.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_130784:48 AY027807:48 ENST00000432597.3:-415 uc057xal.1:-415 BC136964:-415 |chr=chr10 |cpg_percent=0.14 |distance=48 |distance_to_tss=538 |end=133569...") |
|||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:23514 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| − | |distance= | + | |distance=-11 |
|distance_to_tss=538 | |distance_to_tss=538 | ||
| − | |end= | + | |end=13502934 |
| + | |end_of_center_position=13502934 | ||
|entrez_id=399833 | |entrez_id=399833 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description=shadow of prion protein | + | |gene_description=shadow of prion protein pseudogene 1 |
| − | |gene_id= | + | |gene_id=222389 |
| − | |gene_name= | + | |gene_name=BEN domain containing 7 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:23514 |
| − | |gene_symbol= | + | |gene_symbol=BEND7 |
| − | |gene_synonyms= | + | |gene_synonyms=FLJ40283 |
|gene_type=pseudo | |gene_type=pseudo | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:23514 |
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_033789 | |nearest_promoter_id=NR_033789 | ||
|nearest_refseq=NM_001001678 | |nearest_refseq=NM_001001678 | ||
|nearest_unigene=Hs.660426 | |nearest_unigene=Hs.660426 | ||
| − | |num_trans= | + | |num_trans=222389 |
|species=human | |species=human | ||
| − | |start= | + | |start=13502933 |
| + | |start_of_center_position=13502933 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000378605.3 BC031618 |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_232190.1 | |tss_id=hg_232190.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q8N7W2 |
}} | }} | ||
Latest revision as of 11:05, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 13502933 |
|---|---|
| End of the center position in the TSS region: | 13502934 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000378605.3 BC031618 |
|---|---|
| Distance: | -11 |
| Num_trans: | 222389 |
| All_trans: | HGNC:23514 |
TATA-Box annotation
| Distance to TSS: | 538 |
|---|---|
| Nearest PromoterID: | NR_033789 |
| Entrez ID: | 399833 |
| Nearest Unigene: | Hs.660426 |
| Nearest Refseq: | NM_001001678 |
| Nearest Ensembl: | |
| Gene Name: | BEN domain containing 7 |
| Gene Alias: | - |
| Gene Description: | shadow of prion protein pseudogene 1 |
| Gene Type: | pseudo |
| CpG%: | 0.14 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
