Difference between revisions of "TSS:Hg 232468.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000631422.1:0 |chr=chr10 |cpg_percent=0.03 |distance=0 |distance_to_tss=-1005 |end=91409287 |entrez_id=143279 |gc_percent=0.462687 |gene_alias=- |...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=LF345584:35 MA581161:35 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=35 |
| − | |distance_to_tss= | + | |distance_to_tss=45 |
| − | |end= | + | |end=94546470 |
| + | |end_of_center_position=94546463 | ||
|entrez_id=143279 | |entrez_id=143279 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| Line 11: | Line 12: | ||
|gene_description=HECT domain E3 ubiquitin protein ligase 2 | |gene_description=HECT domain E3 ubiquitin protein ligase 2 | ||
|gene_id=143279 | |gene_id=143279 | ||
| − | |gene_name= | + | |gene_name=HECTD2 |
|gene_source=HGNC:26736 | |gene_source=HGNC:26736 | ||
|gene_symbol=HECTD2 | |gene_symbol=HECTD2 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=HGNC:26736 | |hgnc_mgi_id=HGNC:26736 | ||
|nearest_ensembl=ENSG00000165338 | |nearest_ensembl=ENSG00000165338 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001348365 |
|nearest_refseq=NM_173497 | |nearest_refseq=NM_173497 | ||
|nearest_unigene=Hs.596096 | |nearest_unigene=Hs.596096 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
| − | |start= | + | |start=94546454 |
| − | |strand= | + | |start_of_center_position=94546462 |
| − | |transcript_name= | + | |strand=- |
| − | |tss_classification= | + | |transcript_name=LF345584 MA581161 |
| + | |tss_classification=no | ||
|tss_id=hg_232468.1 | |tss_id=hg_232468.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 08:38, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 94546462 |
|---|---|
| End of the center position in the TSS region: | 94546463 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF345584 MA581161 |
|---|---|
| Distance: | 35 |
| Num_trans: | 2 |
| All_trans: | LF345584:35 MA581161:35 |
TATA-Box annotation
| Distance to TSS: | 45 |
|---|---|
| Nearest PromoterID: | NM_001348365 |
| Entrez ID: | 143279 |
| Nearest Unigene: | Hs.596096 |
| Nearest Refseq: | NM_173497 |
| Nearest Ensembl: | ENSG00000165338 |
| Gene Name: | HECTD2 |
| Gene Alias: | - |
| Gene Description: | HECT domain E3 ubiquitin protein ligase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
