Difference between revisions of "TSS:Hg 233599.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000439373.2:42 uc009wvv.2:42 NM_001136107:88 BC157860:88 BC171858:88 |chr=chr1 |cpg_percent=0.01 |distance=42 |distance_to_tss=-88 |end=170145959...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |HOMT1B= |
| − | |chr= | + | |NTM1B= |
| + | |all_trans=HGNC:8777 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=109 |
|distance_to_tss=-88 | |distance_to_tss=-88 | ||
| − | |end= | + | |end=72669173 |
| + | |end_of_center_position=72669173 | ||
|entrez_id=149281 | |entrez_id=149281 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| − | |gene_alias=C1orf184 | + | |gene_alias=C1orf184{{!}}HOMT1B{{!}}NTM1B |
|gene_description=methyltransferase like 11B | |gene_description=methyltransferase like 11B | ||
| − | |gene_id= | + | |gene_id=5138 |
| − | |gene_name= | + | |gene_name=phosphodiesterase 2A |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:8777 |
| − | |gene_symbol= | + | |gene_symbol=PDE2A |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:8777 |
|nearest_ensembl=ENSG00000203740 | |nearest_ensembl=ENSG00000203740 | ||
|nearest_promoter_id=NM_001136107 | |nearest_promoter_id=NM_001136107 | ||
|nearest_refseq=NM_001136107 | |nearest_refseq=NM_001136107 | ||
|nearest_unigene=Hs.553612 | |nearest_unigene=Hs.553612 | ||
| − | |num_trans= | + | |num_trans=5138 |
|species=human | |species=human | ||
| − | |start= | + | |start=72669172 |
| − | |strand= | + | |start_of_center_position=72669172 |
| − | |transcript_name= | + | |strand=- |
| + | |transcript_name=ENST00000540345.5 AY495087 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_233599.1 | |tss_id=hg_233599.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=O00408 Q8IW54 |
}} | }} | ||
Latest revision as of 11:35, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72669172 |
|---|---|
| End of the center position in the TSS region: | 72669173 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000540345.5 AY495087 |
|---|---|
| Distance: | 109 |
| Num_trans: | 5138 |
| All_trans: | HGNC:8777 |
TATA-Box annotation
| Distance to TSS: | -88 |
|---|---|
| Nearest PromoterID: | NM_001136107 |
| Entrez ID: | 149281 |
| Nearest Unigene: | Hs.553612 |
| Nearest Refseq: | NM_001136107 |
| Nearest Ensembl: | ENSG00000203740 |
| Gene Name: | phosphodiesterase 2A |
| Gene Alias: | C1orf184|HOMT1B|NTM1B |
| Gene Description: | methyltransferase like 11B |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
