Difference between revisions of "TSS:Hg 233751.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |COX2= |
| + | |GRIPGHS= | ||
| + | |PGG/HS= | ||
| + | |PGHS-2= | ||
| + | |PHS-2= | ||
| + | |all_trans=HGNC:1491 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance= | + | |distance=16 |
| − | |distance_to_tss= | + | |distance_to_tss=26 |
| − | |end= | + | |end=19485559 |
| + | |end_of_center_position=19485557 | ||
|entrez_id=5743 | |entrez_id=5743 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=COX-2 | + | |gene_alias=COX-2{{!}}COX2{{!}}GRIPGHS{{!}}PGG/HS{{!}}PGHS-2{{!}}PHS-2{{!}}hCox-2 |
|gene_description=prostaglandin-endoperoxide synthase 2 | |gene_description=prostaglandin-endoperoxide synthase 2 | ||
| − | |gene_id= | + | |gene_id=832 |
| − | |gene_name= | + | |gene_name=capping actin protein of muscle Z-line subunit beta |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:1491 |
| − | |gene_symbol= | + | |gene_symbol=CAPZB |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hCox-2= |
| + | |hgnc_mgi_id=HGNC:1491 | ||
|nearest_ensembl=ENSG00000073756 | |nearest_ensembl=ENSG00000073756 | ||
|nearest_promoter_id=NM_000963 | |nearest_promoter_id=NM_000963 | ||
|nearest_refseq=NM_000963 | |nearest_refseq=NM_000963 | ||
|nearest_unigene=Hs.196384 | |nearest_unigene=Hs.196384 | ||
| − | |num_trans= | + | |num_trans=832 |
|species=human | |species=human | ||
| − | |start= | + | |start=19485554 |
| − | |strand= | + | |start_of_center_position=19485556 |
| − | |tata_box= | + | |strand=- |
| − | |transcript_name= | + | |tata_box=50(CTTTTTATAAGA,+,0.00) |
| + | |transcript_name=ENST00000264202.8 ENST00000459967.6 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_233751.1 | |tss_id=hg_233751.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A384MR50 B1AK85 Q7L4N0 |
}} | }} | ||
Latest revision as of 11:39, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 19485556 |
|---|---|
| End of the center position in the TSS region: | 19485557 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000264202.8 ENST00000459967.6 |
|---|---|
| Distance: | 16 |
| Num_trans: | 832 |
| All_trans: | HGNC:1491 |
TATA-Box annotation
| Distance to TSS: | 26 |
|---|---|
| Nearest PromoterID: | NM_000963 |
| Entrez ID: | 5743 |
| Nearest Unigene: | Hs.196384 |
| Nearest Refseq: | NM_000963 |
| Nearest Ensembl: | ENSG00000073756 |
| Gene Name: | capping actin protein of muscle Z-line subunit beta |
| Gene Alias: | COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 |
| Gene Description: | prostaglandin-endoperoxide synthase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 50(CTTTTTATAAGA,+,0.00) |
