Difference between revisions of "TSS:Hg 234420.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |EHK= | ||
| + | |EHK1= | ||
| + | |EPPK= | ||
| + | |K1= | ||
| + | |KRT1A= | ||
| + | |NEPPK= | ||
| + | |all_trans=HGNC:5031 | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=9 |
|distance_to_tss=4673 | |distance_to_tss=4673 | ||
| − | |end= | + | |end=54280738 |
| + | |end_of_center_position=54280738 | ||
|entrez_id=3848 | |entrez_id=3848 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
| − | |gene_alias=CK1 | + | |gene_alias=CK1{{!}}EHK{{!}}EHK1{{!}}EPPK{{!}}K1{{!}}KRT1A{{!}}NEPPK |
|gene_description=keratin 1 | |gene_description=keratin 1 | ||
| − | |gene_name= | + | |gene_id=3178 |
| + | |gene_name=heterogeneous nuclear ribonucleoprotein A1 | ||
| + | |gene_source=HGNC:5031 | ||
| + | |gene_symbol=HNRNPA1 | ||
| + | |gene_synonyms=ALS20 hnRNP-A1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:5031 | ||
|nearest_ensembl=ENSG00000167768 | |nearest_ensembl=ENSG00000167768 | ||
|nearest_promoter_id=NM_006121 | |nearest_promoter_id=NM_006121 | ||
|nearest_refseq=NM_006121 | |nearest_refseq=NM_006121 | ||
|nearest_unigene=Hs.80828 | |nearest_unigene=Hs.80828 | ||
| − | |num_trans= | + | |num_trans=3178 |
|species=human | |species=human | ||
| − | |start= | + | |start=54280737 |
| + | |start_of_center_position=54280737 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AK298176 BC009600 GQ900890 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_234420.1 | |tss_id=hg_234420.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=B4DP35 | ||
}} | }} | ||
Latest revision as of 11:53, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 54280737 |
|---|---|
| End of the center position in the TSS region: | 54280738 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK298176 BC009600 GQ900890 |
|---|---|
| Distance: | 9 |
| Num_trans: | 3178 |
| All_trans: | HGNC:5031 |
TATA-Box annotation
| Distance to TSS: | 4673 |
|---|---|
| Nearest PromoterID: | NM_006121 |
| Entrez ID: | 3848 |
| Nearest Unigene: | Hs.80828 |
| Nearest Refseq: | NM_006121 |
| Nearest Ensembl: | ENSG00000167768 |
| Gene Name: | heterogeneous nuclear ribonucleoprotein A1 |
| Gene Alias: | CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK |
| Gene Description: | keratin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
