Difference between revisions of "TSS:Hg 23452.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000409273.5:-63 ENST00000409605.1:-63 NM_001199145:-63 NM_001199144:-63 uc010fpq.4:-63 uc010fpr.4:-63 EF119711:-63 EF119717:-63 |chr=chr2 |cpg_per...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:14303 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=16 |
| − | |distance_to_tss= | + | |distance_to_tss=-21 |
|end=167187356 | |end=167187356 | ||
| + | |end_of_center_position=167187351 | ||
|entrez_id=129446 | |entrez_id=129446 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=HGNC:14303 | |hgnc_mgi_id=HGNC:14303 | ||
|nearest_ensembl=ENSG00000163092 | |nearest_ensembl=ENSG00000163092 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001199144 |
|nearest_refseq=NM_152381 | |nearest_refseq=NM_152381 | ||
|nearest_unigene=Hs.73680 | |nearest_unigene=Hs.73680 | ||
| − | |num_trans= | + | |num_trans=129446 |
|species=human | |species=human | ||
|start=167187345 | |start=167187345 | ||
| + | |start_of_center_position=167187350 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-29(TCCTTTAGACGC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000672671.1 |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_23452.1 | |tss_id=hg_23452.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A4UGR9 | + | |uniprot_id=A0A5F9ZH43 A4UGR9 |
}} | }} | ||
Latest revision as of 11:55, 21 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 167187350 |
|---|---|
| End of the center position in the TSS region: | 167187351 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000672671.1 |
|---|---|
| Distance: | 16 |
| Num_trans: | 129446 |
| All_trans: | HGNC:14303 |
TATA-Box annotation
| Distance to TSS: | -21 |
|---|---|
| Nearest PromoterID: | NM_001199144 |
| Entrez ID: | 129446 |
| Nearest Unigene: | Hs.73680 |
| Nearest Refseq: | NM_152381 |
| Nearest Ensembl: | ENSG00000163092 |
| Gene Name: | xin actin binding repeat containing 2 |
| Gene Alias: | CMYA3 |
| Gene Description: | xin actin binding repeat containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -29(TCCTTTAGACGC,+,0.00) |
