Difference between revisions of "TSS:Hg 234827.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |CENP-J= | ||
| + | |CPAP= | ||
| + | |LAP= | ||
| + | |LIP1= | ||
| + | |MCPH6= | ||
| + | |SASS4= | ||
| + | |SCKL4= | ||
| + | |Sas-4= | ||
| + | |all_trans=HGNC:7648 | ||
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=30 |
| − | |distance_to_tss= | + | |distance_to_tss=38790 |
| − | |end= | + | |end=35471480 |
| + | |end_of_center_position=35471480 | ||
|entrez_id=55835 | |entrez_id=55835 | ||
|gc_percent=0.348259 | |gc_percent=0.348259 | ||
| − | |gene_alias=BM032 | + | |gene_alias=BM032{{!}}CENP-J{{!}}CPAP{{!}}LAP{{!}}LIP1{{!}}MCPH6{{!}}SASS4{{!}}SCKL4{{!}}Sas-4 |
|gene_description=centromere protein J | |gene_description=centromere protein J | ||
| − | |gene_name= | + | |gene_id=26960 |
| + | |gene_name=neurobeachin | ||
| + | |gene_source=HGNC:7648 | ||
| + | |gene_symbol=NBEA | ||
| + | |gene_synonyms=BCL8B FLJ10197 KIAA1544 LYST2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7648 | ||
|nearest_ensembl=ENSG00000151849 | |nearest_ensembl=ENSG00000151849 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_018451 |
|nearest_refseq=NM_018451 | |nearest_refseq=NM_018451 | ||
|nearest_unigene=Hs.513379 | |nearest_unigene=Hs.513379 | ||
| − | |num_trans= | + | |num_trans=26960 |
|species=human | |species=human | ||
| − | |start= | + | |start=35471479 |
| + | |start_of_center_position=35471479 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=13(CTGTTTAAAAAG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=AK297773 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_234827.1 | |tss_id=hg_234827.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=B7Z4S7 | ||
}} | }} | ||
Latest revision as of 12:02, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35471479 |
|---|---|
| End of the center position in the TSS region: | 35471480 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK297773 |
|---|---|
| Distance: | 30 |
| Num_trans: | 26960 |
| All_trans: | HGNC:7648 |
TATA-Box annotation
| Distance to TSS: | 38790 |
|---|---|
| Nearest PromoterID: | NM_018451 |
| Entrez ID: | 55835 |
| Nearest Unigene: | Hs.513379 |
| Nearest Refseq: | NM_018451 |
| Nearest Ensembl: | ENSG00000151849 |
| Gene Name: | neurobeachin |
| Gene Alias: | BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4 |
| Gene Description: | centromere protein J |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.348259 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 13(CTGTTTAAAAAG,-,0.00) |
