Difference between revisions of "TSS:Hg 234831.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000281589.4:-127 uc001upy.4:-127 NM_030979:143 AL136900:160 AK313336:163 BC045608:167 BC027617:177 AF132026:181 DQ895297:204 DQ892103:204 KJ897288...") |
|||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |PABPL3= |
| + | |all_trans=HGNC:1577 | ||
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| − | |distance=- | + | |distance=-68 |
|distance_to_tss=-143 | |distance_to_tss=-143 | ||
| − | |end= | + | |end=36431588 |
| + | |end_of_center_position=36431588 | ||
|entrez_id=5042 | |entrez_id=5042 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=PABP3 | + | |gene_alias=PABP3{{!}}PABPL3{{!}}tPABP |
|gene_description=poly(A) binding protein cytoplasmic 3 | |gene_description=poly(A) binding protein cytoplasmic 3 | ||
| − | |gene_id= | + | |gene_id=8900 |
| − | |gene_name= | + | |gene_name=cyclin A1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:1577 |
| − | |gene_symbol= | + | |gene_symbol=CCNA1 |
| − | |gene_synonyms= | + | |gene_synonyms=CT146 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:1577 |
|nearest_ensembl=ENSG00000151846 | |nearest_ensembl=ENSG00000151846 | ||
|nearest_promoter_id=NM_030979 | |nearest_promoter_id=NM_030979 | ||
|nearest_refseq=NM_030979 | |nearest_refseq=NM_030979 | ||
|nearest_unigene=Hs.458280 | |nearest_unigene=Hs.458280 | ||
| − | |num_trans= | + | |num_trans=8900 |
|species=human | |species=human | ||
| − | |start= | + | |start=36431587 |
| + | |start_of_center_position=36431587 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |tPABP= |
| + | |transcript_name=ENST00000630422.2 AK316392 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_234831.1 | |tss_id=hg_234831.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P78396 |
}} | }} | ||
Latest revision as of 12:02, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 36431587 |
|---|---|
| End of the center position in the TSS region: | 36431588 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000630422.2 AK316392 |
|---|---|
| Distance: | -68 |
| Num_trans: | 8900 |
| All_trans: | HGNC:1577 |
TATA-Box annotation
| Distance to TSS: | -143 |
|---|---|
| Nearest PromoterID: | NM_030979 |
| Entrez ID: | 5042 |
| Nearest Unigene: | Hs.458280 |
| Nearest Refseq: | NM_030979 |
| Nearest Ensembl: | ENSG00000151846 |
| Gene Name: | cyclin A1 |
| Gene Alias: | PABP3|PABPL3|tPABP |
| Gene Description: | poly(A) binding protein cytoplasmic 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
