Difference between revisions of "TSS:Hg 236212.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |DSMA4= | ||
| + | |GEF720= | ||
| + | |Syx= | ||
| + | |Tech= | ||
|all_trans=ENST00000537245.5:28 NM_001265592:28 uc031plb.1:28 AK294875:28 ENST00000400915.7:-266 uc001ano.2:-266 AK125550:-266 AB018263:-288 NM_001042663:-300 ENST00000377732.5:428 uc001ann.2:428 BC042606:428 | |all_trans=ENST00000537245.5:28 NM_001265592:28 uc031plb.1:28 AK294875:28 ENST00000400915.7:-266 uc001ano.2:-266 AK125550:-266 AB018263:-288 NM_001042663:-300 ENST00000377732.5:428 uc001ann.2:428 BC042606:428 | ||
| − | |chr= | + | |chr=chr16 |
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=-28 | |distance_to_tss=-28 | ||
| − | |end= | + | |end=66896952 |
| + | |end_of_center_position=66896949 | ||
|entrez_id=57449 | |entrez_id=57449 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=CMTRIC | + | |gene_alias=CMTRIC{{!}}DSMA4{{!}}GEF720{{!}}Syx{{!}}Tech |
|gene_description=pleckstrin homology and RhoGEF domain containing G5 | |gene_description=pleckstrin homology and RhoGEF domain containing G5 | ||
|gene_id=57449 | |gene_id=57449 | ||
| − | |gene_name= | + | |gene_name=PLEKHG5 |
|gene_source=HGNC:29105 | |gene_source=HGNC:29105 | ||
|gene_symbol=PLEKHG5 | |gene_symbol=PLEKHG5 | ||
| Line 21: | Line 26: | ||
|nearest_refseq=NM_020631 | |nearest_refseq=NM_020631 | ||
|nearest_unigene=Hs.284232 | |nearest_unigene=Hs.284232 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=66896944 |
| − | |strand= | + | |start_of_center_position=66896948 |
| − | |transcript_name= | + | |strand=+ |
| − | |tss_classification= | + | |transcript_name= |
| + | |tss_classification=no | ||
|tss_id=hg_236212.1 | |tss_id=hg_236212.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=O94827 | |uniprot_id=O94827 | ||
}} | }} | ||
Latest revision as of 10:04, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 66896948 |
|---|---|
| End of the center position in the TSS region: | 66896949 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | ENST00000537245.5:28 NM_001265592:28 uc031plb.1:28 AK294875:28 ENST00000400915.7:-266 uc001ano.2:-266 AK125550:-266 AB018263:-288 NM_001042663:-300 ENST00000377732.5:428 uc001ann.2:428 BC042606:428 |
TATA-Box annotation
| Distance to TSS: | -28 |
|---|---|
| Nearest PromoterID: | NM_001265592 |
| Entrez ID: | 57449 |
| Nearest Unigene: | Hs.284232 |
| Nearest Refseq: | NM_020631 |
| Nearest Ensembl: | ENSG00000171680 |
| Gene Name: | PLEKHG5 |
| Gene Alias: | CMTRIC|DSMA4|GEF720|Syx|Tech |
| Gene Description: | pleckstrin homology and RhoGEF domain containing G5 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
