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Difference between revisions of "TSS:Hg 236287.1"

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(Created page with "{{TSSDetail |all_trans=ENST00000394282.8:19 uc002enm.4:19 NM_001130487:85 AB021172:-260 ENST00000566065.5:277 ENST00000564867.5:277 ENST00000567454.5:277 uc059vbb.1:277 uc059v...")
 
 
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{{TSSDetail
 
{{TSSDetail
−
|all_trans=ENST00000394282.8:19 uc002enm.4:19 NM_001130487:85 AB021172:-260 ENST00000566065.5:277 ENST00000564867.5:277 ENST00000567454.5:277 uc059vbb.1:277 uc059vbc.1:277 uc059vbd.1:277 ENST00000567667.5:-280 uc059vba.1:-280 ENST00000565304.5:-282 uc059vaz.1:-282 ENST00000562725.5:-289 uc059vay.1:-289 ENST00000564126.5:-292 uc059vax.1:-292 ENST00000569539.5:-295 uc059vaw.1:-295 ENST00000569578.5:296 ENST00000421602.6:296 uc059vbe.1:296 uc059vbf.1:296 AK126729:296 ENST00000561779.5:299 uc059vbg.1:299 ENST00000569404.5:-301 ENST00000565430.5:301 ENST00000567063.5:301 uc059vav.1:-301 uc059vbh.1:301 uc059vbi.1:301 ENST00000566041.5:308 uc059vbj.1:308 ENST00000566061.5:313 uc059vbk.1:313 AK126574:313 ENST00000258187.9:-340 uc002enk.4:-340 NM_020465:-360 ENST00000562764.5:-374 uc059vau.1:-374 CR936733:400
+
|SMAP-8=
 +
|SMAP8=
 +
|all_trans=HGNC:25706
 
|chr=chr16
 
|chr=chr16
 
|cpg_percent=0.16
 
|cpg_percent=0.16
−
|distance=19
+
|distance=22
 
|distance_to_tss=-85
 
|distance_to_tss=-85
−
|end=58464005
+
|end=74915997
 +
|end_of_center_position=74915997
 
|entrez_id=65009
 
|entrez_id=65009
 
|gc_percent=0.79602
 
|gc_percent=0.79602
−
|gene_alias=BDM1|SMAP-8|SMAP8
+
|gene_alias=BDM1{{!}}SMAP-8{{!}}SMAP8
 
|gene_description=NDRG family member 4
 
|gene_description=NDRG family member 4
−
|gene_id=65009
+
|gene_id=79726
−
|gene_name=NDRG family member 4
+
|gene_name=WD repeat domain 59
−
|gene_source=HGNC:14466
+
|gene_source=HGNC:25706
−
|gene_symbol=NDRG4
+
|gene_symbol=WDR59
−
|gene_synonyms=KIAA1180 SMAP-8
+
|gene_synonyms=FLJ12270
 
|gene_type=protein-coding
 
|gene_type=protein-coding
−
|hgnc_mgi_id=HGNC:14466
+
|hgnc_mgi_id=HGNC:25706
 
|nearest_ensembl=ENSG00000103034
 
|nearest_ensembl=ENSG00000103034
 
|nearest_promoter_id=NM_001130487
 
|nearest_promoter_id=NM_001130487
 
|nearest_refseq=NM_020465
 
|nearest_refseq=NM_020465
 
|nearest_unigene=Hs.322430
 
|nearest_unigene=Hs.322430
−
|num_trans=44
+
|num_trans=79726
 
|species=human
 
|species=human
−
|start=58464004
+
|start=74915996
−
|strand=+
+
|start_of_center_position=74915996
−
|transcript_name=ENST00000394282.8 uc002enm.4
+
|strand=-
−
|tss_classification=yes
+
|transcript_name=AK091316
 +
|tss_classification=no
 
|tss_id=hg_236287.1
 
|tss_id=hg_236287.1
 
|tss_score=1
 
|tss_score=1
−
|uniprot_id=Q9ULP0
+
|uniprot_id=
 
}}
 
}}

Latest revision as of 12:34, 21 July 2021

Basic information about the TSS

TSS ID:hg_236287.1
Species:human
Chr:chr16
TSS Classification:no
Start:74915996
End:74915997
Strand:-
TSS Score:1
Start of the center position in the TSS region:74915996
End of the center position in the TSS region:74915997



Gene and protein annotation

Transcript_name:AK091316
Distance:22
GeneID:79726
HGNC/MGI_ID:HGNC:25706
UniProt_ID:
Gene_name:WD repeat domain 59
Gene_symbol:WDR59
Gene_synonyms:FLJ12270
Gene_source:HGNC:25706



Transcript annotation

Transcript_name:AK091316
Distance:22
Num_trans:79726
All_trans:HGNC:25706



TATA-Box annotation

Distance to TSS:-85
Nearest PromoterID:NM_001130487
Entrez ID:65009
Nearest Unigene:Hs.322430
Nearest Refseq:NM_020465
Nearest Ensembl:ENSG00000103034
Gene Name:WD repeat domain 59
Gene Alias:BDM1|SMAP-8|SMAP8
Gene Description:NDRG family member 4
Gene Type:protein-coding
CpG%:0.16
GC%:0.79602
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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