Difference between revisions of "TSS:Hg 236905.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |CHC17= |
| + | |CLH-17= | ||
| + | |CLTCL2= | ||
| + | |Hc= | ||
| + | |all_trans=HGNC:7207 | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| − | |distance= | + | |distance=-2 |
| − | |distance_to_tss= | + | |distance_to_tss=26 |
| − | |end= | + | |end=7583531 |
| + | |end_of_center_position=7583531 | ||
|entrez_id=1213 | |entrez_id=1213 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| − | |gene_alias=CHC | + | |gene_alias=CHC{{!}}CHC17{{!}}CLH-17{{!}}CLTCL2{{!}}Hc{{!}}MRD56 |
|gene_description=clathrin heavy chain | |gene_description=clathrin heavy chain | ||
| − | |gene_name= | + | |gene_id=9526 |
| + | |gene_name=mannose-P-dolichol utilization defect 1 | ||
| + | |gene_source=HGNC:7207 | ||
| + | |gene_symbol=MPDU1 | ||
| + | |gene_synonyms=CDGIf Lec35 PQLC5 SL15 SLC66A5 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7207 | ||
|nearest_ensembl=ENSG00000141367 | |nearest_ensembl=ENSG00000141367 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_004859 |
|nearest_refseq=NM_004859 | |nearest_refseq=NM_004859 | ||
|nearest_unigene=Hs.491351 | |nearest_unigene=Hs.491351 | ||
| − | |num_trans= | + | |num_trans=9526 |
|species=human | |species=human | ||
| − | |start= | + | |start=7583530 |
| − | |strand= | + | |start_of_center_position=7583530 |
| − | |transcript_name= | + | |strand=+ |
| + | |transcript_name=ENST00000582151.1 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_236905.1 | |tss_id=hg_236905.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=J3KSI4 | ||
}} | }} | ||
Latest revision as of 12:48, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 7583530 |
|---|---|
| End of the center position in the TSS region: | 7583531 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000582151.1 |
|---|---|
| Distance: | -2 |
| Num_trans: | 9526 |
| All_trans: | HGNC:7207 |
TATA-Box annotation
| Distance to TSS: | 26 |
|---|---|
| Nearest PromoterID: | NM_004859 |
| Entrez ID: | 1213 |
| Nearest Unigene: | Hs.491351 |
| Nearest Refseq: | NM_004859 |
| Nearest Ensembl: | ENSG00000141367 |
| Gene Name: | mannose-P-dolichol utilization defect 1 |
| Gene Alias: | CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 |
| Gene Description: | clathrin heavy chain |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
