Difference between revisions of "TSS:Hg 237646.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |FLRN= |
| + | |RNU3IP1= | ||
| + | |all_trans=HGNC:10310 | ||
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=111 |
| − | |distance_to_tss= | + | |distance_to_tss=5866 |
| − | |end= | + | |end=48619295 |
| + | |end_of_center_position=48619295 | ||
|entrez_id=2091 | |entrez_id=2091 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
| − | |gene_alias=FIB | + | |gene_alias=FIB{{!}}FLRN{{!}}Nop1{{!}}RNU3IP1 |
|gene_description=fibrillarin | |gene_description=fibrillarin | ||
| − | |gene_id= | + | |gene_id=6141 |
| − | |gene_name= | + | |gene_name=ribosomal protein L18 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:10310 |
| − | |gene_symbol= | + | |gene_symbol=RPL18 |
| − | |gene_synonyms= | + | |gene_synonyms=L18 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:10310 |
|nearest_ensembl=ENSG00000105202 | |nearest_ensembl=ENSG00000105202 | ||
|nearest_promoter_id=NM_001436 | |nearest_promoter_id=NM_001436 | ||
|nearest_refseq=NM_001436 | |nearest_refseq=NM_001436 | ||
|nearest_unigene=Hs.299002 | |nearest_unigene=Hs.299002 | ||
| − | |num_trans= | + | |num_trans=6141 |
|species=human | |species=human | ||
| − | |start= | + | |start=48619294 |
| + | |start_of_center_position=48619294 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-12(TCCTTTATAGGT,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000550671.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_237646.1 | |tss_id=hg_237646.1 | ||
Latest revision as of 13:04, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48619294 |
|---|---|
| End of the center position in the TSS region: | 48619295 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000550671.1 |
|---|---|
| Distance: | 111 |
| Num_trans: | 6141 |
| All_trans: | HGNC:10310 |
TATA-Box annotation
| Distance to TSS: | 5866 |
|---|---|
| Nearest PromoterID: | NM_001436 |
| Entrez ID: | 2091 |
| Nearest Unigene: | Hs.299002 |
| Nearest Refseq: | NM_001436 |
| Nearest Ensembl: | ENSG00000105202 |
| Gene Name: | ribosomal protein L18 |
| Gene Alias: | FIB|FLRN|Nop1|RNU3IP1 |
| Gene Description: | fibrillarin |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -12(TCCTTTATAGGT,+,0.00) |
