Difference between revisions of "TSS:Hg 238265.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000613231.1:239 ENST00000614771.1:239 NR_131157:239 uc061xzg.1:239 uc002xyu.2:239 AK056098:239 |chr=chr20 |cpg_percent=0.135 |distance=239 |distan...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |TMEPAI= |
| − | |chr= | + | |all_trans=HGNC:620 |
| + | |chr=chr21 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| − | |distance= | + | |distance=9 |
| − | |distance_to_tss= | + | |distance_to_tss=79 |
| − | |end= | + | |end=26170798 |
| + | |end_of_center_position=26170797 | ||
|entrez_id=56937 | |entrez_id=56937 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=STAG1 | + | |gene_alias=STAG1{{!}}TMEPAI |
| − | |gene_description= | + | |gene_description=prostate transmembrane protein, androgen induced 1 |
| − | |gene_id= | + | |gene_id=351 |
| − | |gene_name= | + | |gene_name=amyloid beta precursor protein |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:620 |
| − | |gene_symbol= | + | |gene_symbol=APP |
| − | |gene_synonyms= | + | |gene_synonyms=alpha-sAPP |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:620 |
|nearest_ensembl=ENSG00000124225 | |nearest_ensembl=ENSG00000124225 | ||
|nearest_promoter_id=NM_020182 | |nearest_promoter_id=NM_020182 | ||
|nearest_refseq=NM_020182 | |nearest_refseq=NM_020182 | ||
|nearest_unigene=Hs.517155 | |nearest_unigene=Hs.517155 | ||
| − | |num_trans= | + | |num_trans=351 |
|species=human | |species=human | ||
| − | |start= | + | |start=26170795 |
| − | |strand= | + | |start_of_center_position=26170796 |
| − | |transcript_name= | + | |strand=- |
| + | |transcript_name=ENST00000357903.7 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_238265.1 | |tss_id=hg_238265.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P05067 |
}} | }} | ||
Latest revision as of 13:18, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 26170796 |
|---|---|
| End of the center position in the TSS region: | 26170797 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000357903.7 |
|---|---|
| Distance: | 9 |
| Num_trans: | 351 |
| All_trans: | HGNC:620 |
TATA-Box annotation
| Distance to TSS: | 79 |
|---|---|
| Nearest PromoterID: | NM_020182 |
| Entrez ID: | 56937 |
| Nearest Unigene: | Hs.517155 |
| Nearest Refseq: | NM_020182 |
| Nearest Ensembl: | ENSG00000124225 |
| Gene Name: | amyloid beta precursor protein |
| Gene Alias: | STAG1|TMEPAI |
| Gene Description: | prostate transmembrane protein, androgen induced 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
