Difference between revisions of "TSS:Hg 238418.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |ATP5A= | ||
| + | |ATPM= | ||
| + | |CF6= | ||
| + | |F6= | ||
|all_trans=S41243:152 S41242:152 | |all_trans=S41243:152 S41242:152 | ||
| − | |chr= | + | |chr=chr2 |
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=-145390 | |distance_to_tss=-145390 | ||
| − | |end= | + | |end=14632749 |
| + | |end_of_center_position=14632742 | ||
|entrez_id=522 | |entrez_id=522 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
| − | |gene_alias=ATP5 | + | |gene_alias=ATP5{{!}}ATP5A{{!}}ATP5J{{!}}ATPM{{!}}CF6{{!}}F6 |
| − | |gene_description= | + | |gene_description=ATP synthase peripheral stalk subunit F6 |
|gene_id=351 | |gene_id=351 | ||
| − | |gene_name= | + | |gene_name=ATP5PF |
|gene_source=HGNC:620 | |gene_source=HGNC:620 | ||
|gene_symbol=APP | |gene_symbol=APP | ||
| Line 18: | Line 23: | ||
|hgnc_mgi_id=HGNC:620 | |hgnc_mgi_id=HGNC:620 | ||
|nearest_ensembl=ENSG00000154723 | |nearest_ensembl=ENSG00000154723 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001003696 |
|nearest_refseq=NM_001685 | |nearest_refseq=NM_001685 | ||
|nearest_unigene=Hs.246310 | |nearest_unigene=Hs.246310 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=14632733 |
| + | |start_of_center_position=14632741 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name= |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_238418.1 | |tss_id=hg_238418.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 10:56, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 14632741 |
|---|---|
| End of the center position in the TSS region: | 14632742 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | S41243:152 S41242:152 |
TATA-Box annotation
| Distance to TSS: | -145390 |
|---|---|
| Nearest PromoterID: | NM_001003696 |
| Entrez ID: | 522 |
| Nearest Unigene: | Hs.246310 |
| Nearest Refseq: | NM_001685 |
| Nearest Ensembl: | ENSG00000154723 |
| Gene Name: | ATP5PF |
| Gene Alias: | ATP5|ATP5A|ATP5J|ATPM|CF6|F6 |
| Gene Description: | ATP synthase peripheral stalk subunit F6 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
