Difference between revisions of "TSS:Hg 241036.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=LF343156:38 MA578733:38 LF343155:-97 MA578732:-97 LF343154:-294 MA578731:-294 LF343157:327 MA578734:327 AK022326:498 |
| − | |chr= | + | |chr=chr5 |
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| − | |distance= | + | |distance=38 |
| − | |distance_to_tss=- | + | |distance_to_tss=-334 |
| − | |end= | + | |end=138934456 |
| + | |end_of_center_position=138934455 | ||
|entrez_id=2555 | |entrez_id=2555 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| Line 11: | Line 12: | ||
|gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit | |gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit | ||
|gene_id=2555 | |gene_id=2555 | ||
| − | |gene_name= | + | |gene_name=GABRA2 |
|gene_source=HGNC:4076 | |gene_source=HGNC:4076 | ||
|gene_symbol=GABRA2 | |gene_symbol=GABRA2 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_000807 | |nearest_refseq=NM_000807 | ||
|nearest_unigene=Hs.48372 | |nearest_unigene=Hs.48372 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
| − | |start= | + | |start=138934453 |
| − | |strand= | + | |start_of_center_position=138934454 |
| − | |transcript_name= | + | |strand=+ |
| − | |tss_classification= | + | |transcript_name=LF343156 MA578733 |
| + | |tss_classification=no | ||
|tss_id=hg_241036.1 | |tss_id=hg_241036.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=G5E9Z6 Q8TBI4 | |uniprot_id=G5E9Z6 Q8TBI4 | ||
}} | }} | ||
Latest revision as of 11:56, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 138934454 |
|---|---|
| End of the center position in the TSS region: | 138934455 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF343156 MA578733 |
|---|---|
| Distance: | 38 |
| Num_trans: | 9 |
| All_trans: | LF343156:38 MA578733:38 LF343155:-97 MA578732:-97 LF343154:-294 MA578731:-294 LF343157:327 MA578734:327 AK022326:498 |
TATA-Box annotation
| Distance to TSS: | -334 |
|---|---|
| Nearest PromoterID: | NM_000807 |
| Entrez ID: | 2555 |
| Nearest Unigene: | Hs.48372 |
| Nearest Refseq: | NM_000807 |
| Nearest Ensembl: | ENSG00000151834 |
| Gene Name: | GABRA2 |
| Gene Alias: | - |
| Gene Description: | gamma-aminobutyric acid type A receptor alpha2 subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
