Difference between revisions of "TSS:Hg 242510.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000430479.5:-74 uc021zzs.2:-74 ENST00000405218.6:-75 uc064bqd.1:-75 NM_001163147:-145 NM_004956:-145 AK312863:173 BC098403:181 ENST00000405192.6:1...") |
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| Line 3: | Line 3: | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=145 | |distance_to_tss=145 | ||
| − | |end= | + | |end=88209417 |
| + | |end_of_center_position=88209410 | ||
|entrez_id=2115 | |entrez_id=2115 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| Line 11: | Line 12: | ||
|gene_description=ETS variant 1 | |gene_description=ETS variant 1 | ||
|gene_id=2115 | |gene_id=2115 | ||
| − | |gene_name= | + | |gene_name=ETV1 |
|gene_source=HGNC:3490 | |gene_source=HGNC:3490 | ||
|gene_symbol=ETV1 | |gene_symbol=ETV1 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=HGNC:3490 | |hgnc_mgi_id=HGNC:3490 | ||
|nearest_ensembl=ENSG00000006468 | |nearest_ensembl=ENSG00000006468 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001163147 |
|nearest_refseq=NM_004956 | |nearest_refseq=NM_004956 | ||
|nearest_unigene=Hs.22634 | |nearest_unigene=Hs.22634 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=88209402 |
| − | |strand= | + | |start_of_center_position=88209409 |
| − | |transcript_name= | + | |strand=+ |
| − | |tss_classification= | + | |transcript_name= |
| + | |tss_classification=no | ||
|tss_id=hg_242510.1 | |tss_id=hg_242510.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=P50549 | |uniprot_id=P50549 | ||
}} | }} | ||
Latest revision as of 12:29, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 88209409 |
|---|---|
| End of the center position in the TSS region: | 88209410 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | ENST00000430479.5:-74 uc021zzs.2:-74 ENST00000405218.6:-75 uc064bqd.1:-75 NM_001163147:-145 NM_004956:-145 AK312863:173 BC098403:181 ENST00000405192.6:196 uc003ssw.5:196 ENST00000433547.1:206 uc064bqr.1:206 AB209202:208 ENST00000483075.1:233 uc064bqq.1:233 BC106762:460 BC106763:460 |
TATA-Box annotation
| Distance to TSS: | 145 |
|---|---|
| Nearest PromoterID: | NM_001163147 |
| Entrez ID: | 2115 |
| Nearest Unigene: | Hs.22634 |
| Nearest Refseq: | NM_004956 |
| Nearest Ensembl: | ENSG00000006468 |
| Gene Name: | ETV1 |
| Gene Alias: | ER81 |
| Gene Description: | ETS variant 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
