Difference between revisions of "TSS:Hg 242857.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |chr= | + | |all_trans=HGNC:4522 |
| + | |chr=chr8 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-64 |
|distance_to_tss=33813 | |distance_to_tss=33813 | ||
| − | |end= | + | |end=52939972 |
| + | |end_of_center_position=52939972 | ||
|entrez_id=1278 | |entrez_id=1278 | ||
|gc_percent=0.442786 | |gc_percent=0.442786 | ||
| − | |gene_alias=OI4 | + | |gene_alias=EDSARTH2{{!}}EDSCV{{!}}OI4 |
|gene_description=collagen type I alpha 2 chain | |gene_description=collagen type I alpha 2 chain | ||
| − | |gene_name= | + | |gene_id=2831 |
| + | |gene_name=neuropeptides B and W receptor 1 | ||
| + | |gene_source=HGNC:4522 | ||
| + | |gene_symbol=NPBWR1 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:4522 | ||
|nearest_ensembl=ENSG00000164692 | |nearest_ensembl=ENSG00000164692 | ||
|nearest_promoter_id=NM_000089 | |nearest_promoter_id=NM_000089 | ||
|nearest_refseq=NM_000089 | |nearest_refseq=NM_000089 | ||
|nearest_unigene=Hs.489142 | |nearest_unigene=Hs.489142 | ||
| − | |num_trans= | + | |num_trans=2831 |
|species=human | |species=human | ||
| − | |start= | + | |start=52939971 |
| − | |strand= | + | |start_of_center_position=52939971 |
| − | |transcript_name= | + | |strand=+ |
| − | |tss_classification= | + | |transcript_name=BC069117 BC107101 |
| + | |tss_classification=yes | ||
|tss_id=hg_242857.1 | |tss_id=hg_242857.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 14:56, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 52939971 |
|---|---|
| End of the center position in the TSS region: | 52939972 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC069117 BC107101 |
|---|---|
| Distance: | -64 |
| Num_trans: | 2831 |
| All_trans: | HGNC:4522 |
TATA-Box annotation
| Distance to TSS: | 33813 |
|---|---|
| Nearest PromoterID: | NM_000089 |
| Entrez ID: | 1278 |
| Nearest Unigene: | Hs.489142 |
| Nearest Refseq: | NM_000089 |
| Nearest Ensembl: | ENSG00000164692 |
| Gene Name: | neuropeptides B and W receptor 1 |
| Gene Alias: | EDSARTH2|EDSCV|OI4 |
| Gene Description: | collagen type I alpha 2 chain |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.442786 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
