Difference between revisions of "TSS:Hg 8794.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000483512.5 | + | |all_trans=NM_001322304:0 NR_136291:0 NR_136293:0 NR_136292:0 NR_136297:0 NR_136295:0 NR_136296:0 NR_136294:0 NM_001322302:0 NM_001322303:0 ENST00000483512.5:4 ENST00000498126.5:17 ENST00000471578.5:-182 NR_136288:-202 NR_136289:-202 NR_136290:-202 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=26 |
|end=224434908 | |end=224434908 | ||
| + | |end_of_center_position=224434875 | ||
|entrez_id=149111 | |entrez_id=149111 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=HGNC:26802 | |hgnc_mgi_id=HGNC:26802 | ||
|nearest_ensembl=ENSG00000143786 | |nearest_ensembl=ENSG00000143786 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_136294 |
|nearest_refseq=NM_152495 | |nearest_refseq=NM_152495 | ||
|nearest_unigene=Hs.731723 | |nearest_unigene=Hs.731723 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=224434841 | |start=224434841 | ||
| + | |start_of_center_position=224434874 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001322303.2 NM_001322304.2 NM_001322302.2 NR_136297.2 NR_136295.2 NR_136292.2 NR_136296.2 NR_136294.2 NR_136291.2 NR_136293.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_8794.1 | |tss_id=hg_8794.1 | ||
Latest revision as of 14:20, 22 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 224434874 |
|---|---|
| End of the center position in the TSS region: | 224434875 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001322303.2 NM_001322304.2 NM_001322302.2 NR_136297.2 NR_136295.2 NR_136292.2 NR_136296.2 NR_136294.2 NR_136291.2 NR_136293.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | NM_001322304:0 NR_136291:0 NR_136293:0 NR_136292:0 NR_136297:0 NR_136295:0 NR_136296:0 NR_136294:0 NM_001322302:0 NM_001322303:0 ENST00000483512.5:4 ENST00000498126.5:17 ENST00000471578.5:-182 NR_136288:-202 NR_136289:-202 NR_136290:-202 |
TATA-Box annotation
| Distance to TSS: | 26 |
|---|---|
| Nearest PromoterID: | NR_136294 |
| Entrez ID: | 149111 |
| Nearest Unigene: | Hs.731723 |
| Nearest Refseq: | NM_152495 |
| Nearest Ensembl: | ENSG00000143786 |
| Gene Name: | cornichon family AMPA receptor auxiliary protein 3 |
| Gene Alias: | CNIH-3 |
| Gene Description: | cornichon family AMPA receptor auxiliary protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
