Difference between revisions of "TSS:Mm 100062.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=BC141529:-133 |chr=chr11 |cpg_percent=0.085 |distance=-133 |distance_to_tss=-1641 |end=115323573 |entrez_id=16470 |gc_percent=0.641791 |gene_alias=Sans|...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:2388365 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
|distance=-133 | |distance=-133 | ||
| − | |distance_to_tss= | + | |distance_to_tss=1029 |
|end=115323573 | |end=115323573 | ||
| − | |entrez_id= | + | |end_of_center_position=115323560 |
| + | |entrez_id=237987 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
| − | |gene_alias= | + | |gene_alias=4732464P15 |
| − | |gene_description= | + | |gene_description=otopetrin 2 |
|gene_id=237987 | |gene_id=237987 | ||
|gene_name=otopetrin 2 | |gene_name=otopetrin 2 | ||
| Line 17: | Line 18: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:2388365 | |hgnc_mgi_id=MGI:2388365 | ||
| − | |nearest_ensembl= | + | |js= |
| − | |nearest_promoter_id= | + | |nearest_ensembl=ENSMUSG00000050201 |
| − | |nearest_refseq= | + | |nearest_promoter_id=NM_001362400 |
| − | |nearest_unigene=Mm. | + | |nearest_refseq=NM_172801 |
| − | |num_trans= | + | |nearest_unigene=Mm.44542 |
| + | |num_trans=237987 | ||
|species=mouse | |species=mouse | ||
|start=115323545 | |start=115323545 | ||
| + | |start_of_center_position=115323559 | ||
|strand=+ | |strand=+ | ||
|transcript_name=BC141529 | |transcript_name=BC141529 | ||
Latest revision as of 10:30, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 115323559 |
|---|---|
| End of the center position in the TSS region: | 115323560 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC141529 |
|---|---|
| Distance: | -133 |
| Num_trans: | 237987 |
| All_trans: | MGI:2388365 |
TATA-Box annotation
| Distance to TSS: | 1029 |
|---|---|
| Nearest PromoterID: | NM_001362400 |
| Entrez ID: | 237987 |
| Nearest Unigene: | Mm.44542 |
| Nearest Refseq: | NM_172801 |
| Nearest Ensembl: | ENSMUSG00000050201 |
| Gene Name: | otopetrin 2 |
| Gene Alias: | 4732464P15 |
| Gene Description: | otopetrin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
