Difference between revisions of "TSS:Hg 100236.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NR_027054: | + | |all_trans=NR_027054:-15 NR_152879:-15 NR_152878:-15 NR_152877:-15 ENST00000670459.1:-42 ENST00000304425.4:-48 ENST00000663833.1:-72 AK124391:83 ENST00000654736.1:-117 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| − | |distance= | + | |distance=-15 |
| − | |distance_to_tss= | + | |distance_to_tss=16 |
|end=21559783 | |end=21559783 | ||
| + | |end_of_center_position=21559782 | ||
|entrez_id=554202 | |entrez_id=554202 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=hsa-lnc-31 | + | |gene_alias=LncHIFCAR{{!}}hsa-lnc-31 |
|gene_description=MIR31 host gene | |gene_description=MIR31 host gene | ||
|gene_id=554202 | |gene_id=554202 | ||
| Line 14: | Line 15: | ||
|gene_source=HGNC:37187 | |gene_source=HGNC:37187 | ||
|gene_symbol=MIR31HG | |gene_symbol=MIR31HG | ||
| − | |gene_synonyms=LOC554202 | + | |gene_synonyms=LOC554202 LncHIFCAR hsa-lnc-31 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:37187 | |hgnc_mgi_id=HGNC:37187 | ||
| + | |hsa-lnc-31= | ||
|nearest_ensembl= | |nearest_ensembl= | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_152877 |
|nearest_refseq=NR_027054 | |nearest_refseq=NR_027054 | ||
|nearest_unigene=Hs.458096 | |nearest_unigene=Hs.458096 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=21559780 | |start=21559780 | ||
| + | |start_of_center_position=21559781 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NR_027054 | + | |transcript_name=NR_027054.2 NR_152879.1 NR_152877.1 NR_152878.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100236.1 | |tss_id=hg_100236.1 | ||
Latest revision as of 17:38, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 21559781 |
|---|---|
| End of the center position in the TSS region: | 21559782 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NR_027054.2 NR_152879.1 NR_152877.1 NR_152878.1 |
|---|---|
| Distance: | -15 |
| Num_trans: | 9 |
| All_trans: | NR_027054:-15 NR_152879:-15 NR_152878:-15 NR_152877:-15 ENST00000670459.1:-42 ENST00000304425.4:-48 ENST00000663833.1:-72 AK124391:83 ENST00000654736.1:-117 |
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NR_152877 |
| Entrez ID: | 554202 |
| Nearest Unigene: | Hs.458096 |
| Nearest Refseq: | NR_027054 |
| Nearest Ensembl: | |
| Gene Name: | MIR31 host gene |
| Gene Alias: | LncHIFCAR|hsa-lnc-31 |
| Gene Description: | MIR31 host gene |
| Gene Type: | ncRNA |
| CpG%: | 0.125 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
