Difference between revisions of "TSS:Mm 10130.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=DQ691593:149 |chr=chr2 |cpg_percent=0.005 |distance=149 |distance_to_tss=67468 |end=3780929 |entrez_id=66540 |gc_percent=0.308458 |gene_alias=3110001A13...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=DQ691593:149 | + | |AA589595= |
| + | |AA959793= | ||
| + | |AI132312= | ||
| + | |all_trans=DQ691593:149 LF258774:-310 MA494351:-310 | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=67468 | |distance_to_tss=67468 | ||
|end=3780929 | |end=3780929 | ||
| + | |end_of_center_position=3780927 | ||
|entrez_id=66540 | |entrez_id=66540 | ||
|gc_percent=0.308458 | |gc_percent=0.308458 | ||
| − | |gene_alias=3110001A13Rik | + | |gene_alias=3110001A13Rik{{!}}AA589595{{!}}AA959793{{!}}AI132312 |
| − | |gene_description= | + | |gene_description=family with sequence similarity 107, member B |
|gene_name=Fam107b | |gene_name=Fam107b | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 16: | Line 20: | ||
|nearest_refseq=NM_025626 | |nearest_refseq=NM_025626 | ||
|nearest_unigene=Mm.277864 | |nearest_unigene=Mm.277864 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=mouse | |species=mouse | ||
|start=3780923 | |start=3780923 | ||
| + | |start_of_center_position=3780926 | ||
|strand=+ | |strand=+ | ||
|transcript_name=DQ691593 | |transcript_name=DQ691593 | ||
Latest revision as of 16:37, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3780926 |
|---|---|
| End of the center position in the TSS region: | 3780927 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | DQ691593 |
|---|---|
| Distance: | 149 |
| Num_trans: | 3 |
| All_trans: | DQ691593:149 LF258774:-310 MA494351:-310 |
TATA-Box annotation
| Distance to TSS: | 67468 |
|---|---|
| Nearest PromoterID: | NM_025626 |
| Entrez ID: | 66540 |
| Nearest Unigene: | Mm.277864 |
| Nearest Refseq: | NM_025626 |
| Nearest Ensembl: | ENSMUSG00000026655 |
| Gene Name: | Fam107b |
| Gene Alias: | 3110001A13Rik|AA589595|AA959793|AI132312 |
| Gene Description: | family with sequence similarity 107, member B |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.308458 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
