Difference between revisions of "TSS:Hg 100598.1"
From referenceTSS
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|SIT-R= | |SIT-R= | ||
| − | |all_trans= | + | |all_trans=HGNC:17710 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance=95 | |distance=95 | ||
| − | |distance_to_tss= | + | |distance_to_tss=362 |
|end=35650573 | |end=35650573 | ||
| + | |end_of_center_position=35650569 | ||
|entrez_id=27240 | |entrez_id=27240 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| − | |gene_alias=SIT | + | |gene_alias=SIT{{!}}SIT-R |
|gene_description=signaling threshold regulating transmembrane adaptor 1 | |gene_description=signaling threshold regulating transmembrane adaptor 1 | ||
|gene_id=27240 | |gene_id=27240 | ||
| Line 22: | Line 23: | ||
|nearest_refseq=NM_014450 | |nearest_refseq=NM_014450 | ||
|nearest_unigene=Hs.88012 | |nearest_unigene=Hs.88012 | ||
| − | |num_trans= | + | |num_trans=27240 |
|species=human | |species=human | ||
|start=35650564 | |start=35650564 | ||
| + | |start_of_center_position=35650568 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-31(CCTCTTAGGGGC,+,0.00) |
| − | |transcript_name=ENST00000486859.5 | + | |transcript_name=ENST00000486859.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100598.1 | |tss_id=hg_100598.1 | ||
Latest revision as of 17:46, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35650568 |
|---|---|
| End of the center position in the TSS region: | 35650569 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000486859.5 |
|---|---|
| Distance: | 95 |
| Num_trans: | 27240 |
| All_trans: | HGNC:17710 |
TATA-Box annotation
| Distance to TSS: | 362 |
|---|---|
| Nearest PromoterID: | NM_014450 |
| Entrez ID: | 27240 |
| Nearest Unigene: | Hs.88012 |
| Nearest Refseq: | NM_014450 |
| Nearest Ensembl: | ENSG00000137078 |
| Gene Name: | signaling threshold regulating transmembrane adaptor 1 |
| Gene Alias: | SIT|SIT-R |
| Gene Description: | signaling threshold regulating transmembrane adaptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -31(CCTCTTAGGGGC,+,0.00) |
