Personal tools

Difference between revisions of "TSS:Hg 100600.1"

From referenceTSS

Jump to: navigation, search
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
 
|SIT-R=
 
|SIT-R=
|all_trans=ENST00000259608.7:0 ENST00000618781.1:0 ENST00000474403.1:0 NM_014450:0 uc003zxe.3:0 uc064sxo.1:0 uc064sxq.1:0 AJ010059:0 BC102029:0 BC104491:0 BC107484:0 AK314758:0 JQ924063:0 AB527705:48 AK093793:201 ENST00000486859.5:434 uc064sxp.1:434
+
|all_trans=HGNC:17710
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.03
 
|cpg_percent=0.03
 
|distance=0
 
|distance=0
|distance_to_tss=13
+
|distance_to_tss=-6
 
|end=35650970
 
|end=35650970
 +
|end_of_center_position=35650937
 
|entrez_id=27240
 
|entrez_id=27240
 
|gc_percent=0.606965
 
|gc_percent=0.606965
|gene_alias=SIT|SIT-R
+
|gene_alias=SIT{{!}}SIT-R
 
|gene_description=signaling threshold regulating transmembrane adaptor 1
 
|gene_description=signaling threshold regulating transmembrane adaptor 1
 
|gene_id=27240
 
|gene_id=27240
Line 22: Line 23:
 
|nearest_refseq=NM_014450
 
|nearest_refseq=NM_014450
 
|nearest_unigene=Hs.88012
 
|nearest_unigene=Hs.88012
|num_trans=17
+
|num_trans=27240
 
|species=human
 
|species=human
 
|start=35650903
 
|start=35650903
 +
|start_of_center_position=35650936
 
|strand=-
 
|strand=-
|transcript_name=ENST00000259608.7 ENST00000618781.1 ENST00000474403.1 NM_014450 uc003zxe.3 uc064sxo.1 uc064sxq.1 AJ010059 BC102029 BC104491 BC107484 AK314758 JQ924063
+
|transcript_name=ENST00000259608.8 ENST00000618781.1 ENST00000474403.1 AJ010059 BC102029 BC104491 BC107484 AK314758 JQ924063
|tss_classification=no
+
|tss_classification=yes
 
|tss_id=hg_100600.1
 
|tss_id=hg_100600.1
 
|tss_score=1
 
|tss_score=1
 
|uniprot_id=A0A087WXW3 I3RY38 Q9Y3P8
 
|uniprot_id=A0A087WXW3 I3RY38 Q9Y3P8
 
}}
 
}}

Latest revision as of 17:47, 19 July 2021

Basic information about the TSS


TSS ID:hg_100600.1
Species:human
Chr:chr9
TSS Classification:yes
Start:35650903
End:35650970
Strand:-
TSS Score:1
Start of the center position in the TSS region:35650936
End of the center position in the TSS region:35650937



Gene and protein annotation


Transcript_name:ENST00000259608.8 ENST00000618781.1 ENST00000474403.1 AJ010059 BC102029 BC104491 BC107484 AK314758 JQ924063
Distance:0
GeneID:27240
HGNC/MGI_ID:HGNC:17710
UniProt_ID:A0A087WXW3 I3RY38 Q9Y3P8
Gene_name:signaling threshold regulating transmembrane adaptor 1
Gene_symbol:SIT1
Gene_synonyms:SIT
Gene_source:HGNC:17710



Transcript annotation


Transcript_name:ENST00000259608.8 ENST00000618781.1 ENST00000474403.1 AJ010059 BC102029 BC104491 BC107484 AK314758 JQ924063
Distance:0
Num_trans:27240
All_trans:HGNC:17710



TATA-Box annotation


Distance to TSS:-6
Nearest PromoterID:NM_014450
Entrez ID:27240
Nearest Unigene:Hs.88012
Nearest Refseq:NM_014450
Nearest Ensembl:ENSG00000137078
Gene Name:signaling threshold regulating transmembrane adaptor 1
Gene Alias:SIT|SIT-R
Gene Description:signaling threshold regulating transmembrane adaptor 1
Gene Type:protein-coding
CpG%:0.03
GC%:0.606965
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):