Difference between revisions of "TSS:Mm 125516.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000096430.10:0 NM_199449:0 uc007vsp.1:0 AK157631:0 AK031782:85 BC059178:227 |chr=chr15 |cpg_percent=0.045 |distance=0 |distance_to_tss=2 |end=5...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |Afr1= |
| + | |Raf= | ||
| + | |all_trans=MGI:2683087 | ||
|chr=chr15 | |chr=chr15 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=2 | |distance_to_tss=2 | ||
|end=57694686 | |end=57694686 | ||
| + | |end_of_center_position=57694669 | ||
|entrez_id=387609 | |entrez_id=387609 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
| − | |gene_alias=Afr-1 | + | |gene_alias=Afr-1{{!}}Afr1{{!}}Raf{{!}}mKIAA0854 |
|gene_description=zinc fingers and homeoboxes 2 | |gene_description=zinc fingers and homeoboxes 2 | ||
|gene_id=387609 | |gene_id=387609 | ||
| Line 17: | Line 20: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:2683087 | |hgnc_mgi_id=MGI:2683087 | ||
| + | |mKIAA0854= | ||
|nearest_ensembl=ENSMUSG00000071757 | |nearest_ensembl=ENSMUSG00000071757 | ||
|nearest_promoter_id=NM_199449 | |nearest_promoter_id=NM_199449 | ||
|nearest_refseq=NM_199449 | |nearest_refseq=NM_199449 | ||
|nearest_unigene=Mm.36557 | |nearest_unigene=Mm.36557 | ||
| − | |num_trans= | + | |num_trans=387609 |
|species=mouse | |species=mouse | ||
|start=57694651 | |start=57694651 | ||
| + | |start_of_center_position=57694668 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000096430.10 | + | |transcript_name=ENSMUST00000096430.10 AK157631 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_125516.1 | |tss_id=mm_125516.1 | ||
Latest revision as of 19:48, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 57694668 |
|---|---|
| End of the center position in the TSS region: | 57694669 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000096430.10 AK157631 |
|---|---|
| Distance: | 0 |
| Num_trans: | 387609 |
| All_trans: | MGI:2683087 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_199449 |
| Entrez ID: | 387609 |
| Nearest Unigene: | Mm.36557 |
| Nearest Refseq: | NM_199449 |
| Nearest Ensembl: | ENSMUSG00000071757 |
| Gene Name: | zinc fingers and homeoboxes 2 |
| Gene Alias: | Afr-1|Afr1|Raf|mKIAA0854 |
| Gene Description: | zinc fingers and homeoboxes 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
