Difference between revisions of "TSS:Hg 103157.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|SNAP190= | |SNAP190= | ||
| − | |all_trans= | + | |all_trans=HGNC:10667 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 7: | Line 7: | ||
|distance_to_tss=-5178 | |distance_to_tss=-5178 | ||
|end=136403618 | |end=136403618 | ||
| + | |end_of_center_position=136403615 | ||
|entrez_id=6621 | |entrez_id=6621 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| − | |gene_alias=PTFalpha | + | |gene_alias=PTFalpha{{!}}SNAP190 |
|gene_description=small nuclear RNA activating complex polypeptide 4 | |gene_description=small nuclear RNA activating complex polypeptide 4 | ||
|gene_id=10807 | |gene_id=10807 | ||
| − | |gene_name= | + | |gene_name=endosome associated trafficking regulator 1 |
|gene_source=HGNC:10667 | |gene_source=HGNC:10667 | ||
| − | |gene_symbol= | + | |gene_symbol=ENTR1 |
|gene_synonyms=NY-CO-3 | |gene_synonyms=NY-CO-3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 22: | Line 23: | ||
|nearest_refseq=NM_003086 | |nearest_refseq=NM_003086 | ||
|nearest_unigene=Hs.113265 | |nearest_unigene=Hs.113265 | ||
| − | |num_trans= | + | |num_trans=10807 |
|species=human | |species=human | ||
|start=136403611 | |start=136403611 | ||
| + | |start_of_center_position=136403614 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000481114 | + | |transcript_name=ENST00000481114.1 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_103157.1 | |tss_id=hg_103157.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 18:42, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136403614 |
|---|---|
| End of the center position in the TSS region: | 136403615 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000481114.1 |
|---|---|
| Distance: | -490 |
| Num_trans: | 10807 |
| All_trans: | HGNC:10667 |
TATA-Box annotation
| Distance to TSS: | -5178 |
|---|---|
| Nearest PromoterID: | NM_003086 |
| Entrez ID: | 6621 |
| Nearest Unigene: | Hs.113265 |
| Nearest Refseq: | NM_003086 |
| Nearest Ensembl: | ENSG00000165684 |
| Gene Name: | endosome associated trafficking regulator 1 |
| Gene Alias: | PTFalpha|SNAP190 |
| Gene Description: | small nuclear RNA activating complex polypeptide 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
