Difference between revisions of "TSS:Mm 135296.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK166583:412 AK166622:412 |chr=chr16 |cpg_percent=0.015 |distance=412 |distance_to_tss=39863 |end=38602698 |entrez_id=67846 |gc_percent=0.512438 |gene_a...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:1333857 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=39863 | |distance_to_tss=39863 | ||
|end=38602698 | |end=38602698 | ||
| + | |end_of_center_position=38602678 | ||
|entrez_id=67846 | |entrez_id=67846 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=MGI:1333857 | |hgnc_mgi_id=MGI:1333857 | ||
|nearest_ensembl=ENSMUSG00000002845 | |nearest_ensembl=ENSMUSG00000002845 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001205287 |
|nearest_refseq=NM_026407 | |nearest_refseq=NM_026407 | ||
|nearest_unigene=Mm.310476 | |nearest_unigene=Mm.310476 | ||
| − | |num_trans= | + | |num_trans=12549 |
|species=mouse | |species=mouse | ||
|start=38602656 | |start=38602656 | ||
| + | |start_of_center_position=38602677 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-59(AGCCCTAAAAGC,-,0.00) |
|transcript_name=AK166583 AK166622 | |transcript_name=AK166583 AK166622 | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 23:23, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 38602677 |
|---|---|
| End of the center position in the TSS region: | 38602678 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK166583 AK166622 |
|---|---|
| Distance: | 412 |
| Num_trans: | 12549 |
| All_trans: | MGI:1333857 |
TATA-Box annotation
| Distance to TSS: | 39863 |
|---|---|
| Nearest PromoterID: | NM_001205287 |
| Entrez ID: | 67846 |
| Nearest Unigene: | Mm.310476 |
| Nearest Refseq: | NM_026407 |
| Nearest Ensembl: | ENSMUSG00000002845 |
| Gene Name: | Rho GTPase activating protein 31 |
| Gene Alias: | 2610033C09Rik |
| Gene Description: | transmembrane protein 39a |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -59(AGCCCTAAAAGC,-,0.00) |
