Difference between revisions of "TSS:Mm 140548.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=BC110284:80 AK076872:365 ENSMUST00000024572.9:366 NM_001083945:366 uc008ahy.1:366 uc008ahz.1:366 AK006083:366 AK016473:404 AK161285:404 AK177506:415 AK0...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:3630308 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| − | |distance= | + | |distance=40 |
|distance_to_tss=-377 | |distance_to_tss=-377 | ||
|end=6948745 | |end=6948745 | ||
| + | |end_of_center_position=6948734 | ||
|entrez_id=100037282 | |entrez_id=100037282 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_001083945 | |nearest_refseq=NM_001083945 | ||
|nearest_unigene=Mm.29830 | |nearest_unigene=Mm.29830 | ||
| − | |num_trans= | + | |num_trans=100037282 |
|species=mouse | |species=mouse | ||
|start=6948721 | |start=6948721 | ||
| + | |start_of_center_position=6948733 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENSMUST00000231794.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_140548.1 | |tss_id=mm_140548.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A338P734 |
}} | }} | ||
Latest revision as of 01:18, 27 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 6948733 |
|---|---|
| End of the center position in the TSS region: | 6948734 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000231794.1 |
|---|---|
| Distance: | 40 |
| Num_trans: | 100037282 |
| All_trans: | MGI:3630308 |
TATA-Box annotation
| Distance to TSS: | -377 |
|---|---|
| Nearest PromoterID: | NM_001083945 |
| Entrez ID: | 100037282 |
| Nearest Unigene: | Mm.29830 |
| Nearest Refseq: | NM_001083945 |
| Nearest Ensembl: | ENSMUSG00000023806 |
| Gene Name: | radial spoke 3B homolog (Chlamydomonas) |
| Gene Alias: | Rshl2b |
| Gene Description: | radial spoke 3B homolog (Chlamydomonas) |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
