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Difference between revisions of "TSS:Mm 146757.1"

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(Created page with "{{TSSDetail |all_trans=AK032826:63 BC022107:83 ENSMUST00000152779.1:89 AK087418:89 AB008811:-169 M31131:-169 uc008edx.2:-488 |chr=chr18 |cpg_percent=0.08 |distance=63 |distanc...")
 
 
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{{TSSDetail
 
{{TSSDetail
|all_trans=AK032826:63 BC022107:83 ENSMUST00000152779.1:89 AK087418:89 AB008811:-169 M31131:-169 uc008edx.2:-488
+
|N-CAD=
 +
|Ncad=
 +
|all_trans=MGI:88355
 
|chr=chr18
 
|chr=chr18
 
|cpg_percent=0.08
 
|cpg_percent=0.08
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|distance_to_tss=690
 
|distance_to_tss=690
 
|end=16808561
 
|end=16808561
 +
|end_of_center_position=16808556
 
|entrez_id=12558
 
|entrez_id=12558
 
|gc_percent=0.661692
 
|gc_percent=0.661692
|gene_alias=CDHN|N-CAD|Ncad
+
|gene_alias=CDHN{{!}}N-CAD{{!}}Ncad
 
|gene_description=cadherin 2
 
|gene_description=cadherin 2
 
|gene_id=12558
 
|gene_id=12558
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|nearest_refseq=NM_007664
 
|nearest_refseq=NM_007664
 
|nearest_unigene=Mm.257437
 
|nearest_unigene=Mm.257437
|num_trans=7
+
|num_trans=12558
 
|species=mouse
 
|species=mouse
 
|start=16808550
 
|start=16808550
 +
|start_of_center_position=16808555
 
|strand=-
 
|strand=-
 
|transcript_name=AK032826
 
|transcript_name=AK032826

Latest revision as of 03:37, 27 July 2021

Basic information about the TSS


TSS ID:mm_146757.1
Species:mouse
Chr:chr18
TSS Classification:yes
Start:16808550
End:16808561
Strand:-
TSS Score:1
Start of the center position in the TSS region:16808555
End of the center position in the TSS region:16808556



Gene and protein annotation


Transcript_name:AK032826
Distance:63
GeneID:12558
HGNC/MGI_ID:MGI:88355
UniProt_ID:Q8BSI9
Gene_name:cadherin 2
Gene_symbol:Cdh2
Gene_synonyms:N-CAD N-cadherin Ncad
Gene_source:MGI:88355



Transcript annotation


Transcript_name:AK032826
Distance:63
Num_trans:12558
All_trans:MGI:88355



TATA-Box annotation


Distance to TSS:690
Nearest PromoterID:NM_007664
Entrez ID:12558
Nearest Unigene:Mm.257437
Nearest Refseq:NM_007664
Nearest Ensembl:ENSMUSG00000024304
Gene Name:cadherin 2
Gene Alias:CDHN|N-CAD|Ncad
Gene Description:cadherin 2
Gene Type:protein-coding
CpG%:0.08
GC%:0.661692
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):